1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GGAATTATGTCTGGTCTCACTTTAGGGCTTATGTCTCTCGGTCTCGTTGAGCTCGAGATTCTCCAACGGAGTGGTACTCCAAAAGAGAAGAAACAATCTGgtaaattgatccttctctttcgtaattcgtcaccgatcaattgattataaggaattgcttgaattgatatgaatctgtatctgatcatttgactttgtgtgaattttgctgtgattgtggaatttgcttgcgattgattgattttttttctcag
species | Arabidopsis thaliana |
transcript | AT4G14230.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTCGAGATTCTCCAACGGAGTGGTACWHCCAAAAGAGAAGAAACAATCTG CTGCGATTTTTCCGGTTGTTCAGAAACAGCATCAGCTTTTAGTGACTCTGCEST: gi|47830040|gb|CK119724.1|CK119724
genomic: CTCGAGATTCTCCAACGGAGTGGTACT-CCAAAAGAGAAGAAACAATCTGgtaaattgat ... tttttctcagCTGCGATTTTTCCGGTTGTTCAGAAACAGCATCAGCTTTTAGTGACTCTGC
EST: GCTCGAGATTCTCCAACGGAGTGGTACTCCAAAAGAGAAGAAACAATCTG CTGCGATTTTTCCGGTTGTTCAGAAACAGCATCAGCTTTTAGTGACTCTGCEST: gi|86061013|gb|DR356770.1|DR356770
genomic: GCTCGAGATTCTCCAACGGAGTGGTACTCCAAAAGAGAAGAAACAATCTGgtaaattgat ... tttttctcagCTGCGATTTTTCCGGTTGTTCAGAAACAGCATCAGCTTTTAGTGACTCTGC
EST: GCTCGAGATTCTCCAACGGAGTG-TACTCCAAAAGAGAAGAAACAATCTG CTGCGATTTTTCCGGTTGTTCAGAAACAGCATCAGCTTTTAGTGACTCTGCEST: gi|86061014|gb|DR356771.1|DR356771
genomic: GCTCGAGATTCTCCAACGGAGTGGTACTCCAAAAGAGAAGAAACAATCTGgtaaattgat ... tttttctcagCTGCGATTTTTCCGGTTGTTCAGAAACAGCATCAGCTTTTAGTGACTCTGC
EST: GCTCGAGATTCTCCAACGGAGTGGTACTCCAAAAGAGAAGAAACAATCTG CTGCGATTTTTCCGGTTGTTCAGAAACAGCATCAGCTTTTAGTGACTCTGCEST: gi|86061017|gb|DR356774.1|DR356774
genomic: GCTCGAGATTCTCCAACGGAGTGGTACTCCAAAAGAGAAGAAACAATCTGgtaaattgat ... tttttctcagCTGCGATTTTTCCGGTTGTTCAGAAACAGCATCAGCTTTTAGTGACTCTGC
EST: GCTCGAGATTCTCCAACGGAGTG-TACTCCAAAAGAGAAGAAACAATCTG CTGCGATTTTTCCGGTTGTTCAGAAACAGCATCAGCTTTTAGTGACTCTGCEST: gi|86061016|gb|DR356773.1|DR356773
genomic: GCTCGAGATTCTCCAACGGAGTGGTACTCCAAAAGAGAAGAAACAATCTGgtaaattgat ... tttttctcagCTGCGATTTTTCCGGTTGTTCAGAAACAGCATCAGCTTTTAGTGACTCTGC
EST: GCTCGAGATTCTCCAACGGAGTGGTACTCCAAAAGAGAAGAAACAATCTG CTGCGATTTTTCCGGTTGTTCAGAAACAGCATCAGCTTTTAGTGACTCTGC
genomic: GCTCGAGATTCTCCAACGGAGTGGTACTCCAAAAGAGAAGAAACAATCTGgtaaattgat ... tttttctcagCTGCGATTTTTCCGGTTGTTCAGAAACAGCATCAGCTTTTAGTGACTCTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAATTATGTCTGGTCTCACTTTAGGGCTTATGTCTCTCGGTCTCGTTGAGCTCGAGATTCTCCAACGGAGTGGTACTCCAAAAGAGAAGAAACAATCTGgtaaattgatccttctctttcgtaattcgtcaccgatcaattgattataaggaattgcttgaattgatatgaatctgtatctgatcatttgactttgtgtgaattttgctgtgattgtggaatttgcttgcgattgattgattttttttctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA