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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcggttttccctaaatttcatttcacttagttttgcattactcaaaatatattagtaaataactgttggttgcgctcttttgcagACCCTTTTCAACTTTATAGACATTGCCAGAGTGGTGAAACCCAACACTTACAGACTG

Basic information

species Arabidopsis thaliana
transcript AT4G11740.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164195430|gb|EL983357.1|EL983357
EST:     CGGATGGAACACGTCGGGGCCGCCGGTTCCTTAAATCTGACAAACTCCAA                         ACCCTTTTCAACTTTATAGACATTGCCAGAGTGGTGAAACCC
genomic: CGGATGGAACACGTCGGGGCCGCCGGTTCCTTAAATCTGACAAACTCCAAgtcggttttc ... tcttttgcagACCCTTTTCAACTTTATAGACATTGCCAGAGTGGTGAAACCC
EST: gi|164147013|gb|ES109973.1|ES109973
EST:     CGGATGGAACACGTCGGGGCCGCCGGTTCCTTAAATCTGACAAACTCCAA                         ACCCTTTTCAACTTTATAGACATTGCCAGAGTGGTGAAACCCAAACACTTA
genomic: CGGATGGAACACGTCGGGGCCGCCGGTTCCTTAAATCTGACAAACTCCAAgtcggttttc ... tcttttgcagACCCTTTTCAACTTTATAGACATTGCCAGAGTGGTGAAACCCAA-CACTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgcattactcaaaatatattagtaaataactgttggttgcgctcttttgcagACCCTTTTCAACTTTATAGACATTGCCAGAGTGGTGAAACCCAACACTTACAGACTG
                          aaataac  putative branch site (score: 2)
                                          cgctctttt  putative PPT
      attactcaaaatatat  TA-rich tract