1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TGGATATAATCATCTTCCATTCTTACCTCCTCAGCCGAGGGCCCAACCACGTCCACCCTCACCTTCGCTGACAGCTCAGAGGTTGATACGGGAACAGCAGgttaggcaacacttactacctacttgactaaacccctctactatattgagagttatgggttattataaaattcttgagctgttacatcgagcag
species | Arabidopsis thaliana |
transcript | AT4G11740.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GAGGTTGGATACGGGAACAGCAG GATGATGAGTATGTTGCGTCCCTGCAAGCTGACCGAGATAAAGAAATGAAGEST: gi|163988069|gb|ES082794.1|ES082794
genomic: GAGGTT-GATACGGGAACAGCAGgttaggcaac ... catcgagcagGATGATGAGTATGTTGCGTCCCTGCAAGCTGACCGAGATAAAGAAATGAAG
EST: GAGGTTGATACGGGAACAGCAG GATGATGAGTATGTTGCGTCCCTGCAAGCTGACCGAGATAAAGAAATGAAGEST: gi|125188645|gb|EL203599.1|EL203599
genomic: GAGGTTGATACGGGAACAGCAGgttaggcaac ... catcgagcagGATGATGAGTATGTTGCGTCCCTGCAAGCTGACCGAGATAAAGAAATGAAG
EST: ATACGGGAACAGCAG GATGATGAGTATGTTGCGTCCCTGCAAGCTGACCGAGATAAAGAAATGAAG
genomic: ATACGGGAACAGCAGgttaggcaac ... catcgagcagGATGATGAGTATGTTGCGTCCCTGCAAGCTGACCGAGATAAAGAAATGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGATATAATCATCTTCCATTCTTACCTCCTCAGCCGAGGGCCCAACCACGTCCACCCTCACCTTCGCTGACAGCTCAGAGGTTGATACGGGAACAGCAGgttaggcaacacttactacctacttgactaaacccctctactatattgagagttatgggttattataaaattcttgagctgttacatcgagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA