1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tacaatacaatagctgtgaaaataatctggtttgagttcctatgtaggcgttctcttcgttactgatttaagttttttttttctctgaatgttgttgcagGAGCTAGAAAGACAACTAGATGCAAAAGAAGCGTCTTTACCTAAGGAGCCTCAAGCTGATGAAGAGAATGCCATTACCCTTCTAATCCGGATGCCGGATG
species | Arabidopsis thaliana |
transcript | AT4G11740.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGTAAAAGAAAAA-GAGGAAGAAGCTCAAAGAAAACTCGAGGAGGAACAG GAGCTAGAAAGACAACTAGATGCAAAAGAAG
genomic: AG-AAAAGAAAAAAGAGGAAGAAGCTCAAAGAAAACTCGAGGAGGAACAGgtgcttcttc ... gttgttgcagGAGCTAGAAAGACAACTAGATGCAAAAGAAG
aggcgttctcttcgttactgatttaagttttttttttctctgaatgttgttgcagGAGCTAGAAAGACAACTAGATGCAAAAGAAGCGTCTTTACCTAAGGAGCCTCAAGCTGATGAAGAGAATGCCATTACCCTTCTAATCCGGATGCCGGATG
tactgat putative branch site (score: 2)
ttactgatttaagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacaatacaatagctgtgaaaataatctggtttgagttcctatgtaggcgttctcttcgttactgatttaagttttttttttctctgaatgttgttgcagGAGCTAGAAAGACAACTAGATGCAAAAGAAGCGTCTTTACCTAAGGAGCCTCAAGCTGATGAAGAGAATGCCATTACCCTTCTAATCCGGATGCCGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- caataca
- - - - - - - - - aaaataa
- - - - - - - - - - - - - - ggtttga
- - - - - - - - - - - - - - - - - - - - - - - - - -tctcttc