Sequence
atgc intronic sequence ATGC exonic sequenceTTACTTGGATTATCCCAGTCTCTGTCGCTTATCCATGACTAATTCCTTGATGAGGAAAGCTGCTAATGATGATAATGCTTGGAAAGCTCTTTATCACAAGgtaattagattcactaatcactcatttgtattagctttgtgtattggaaattcagaaatgattctaggttaaaagatgtgtattcttagcagtttctggattagtgtgtgttttcgtgaatggtgctattttgtttaatgcttctcttacttttttctcatgtgttag
Basic information
species | Arabidopsis thaliana |
transcript | AT4G10925.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G10925.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA08G02790.1 (Glycine max), 5'ss of exon 1
TTACTTGGATTATCCCAGTCTCTGTCGCTTATCCATGACTAATTCCTTGATGAGGAAAGCTGCTAATGATGATAATGCTTGGAAAGCTCTTTATCACAAGgtaattagattcactaatcactcatttgtattagctttgtgtattggaaattcagaaatgatt-ctaggttaaaagatgtgtattcttagcagtttctggattagtgtgtgttttcgtgaatggtgctattttgtttaatgcttctcttacttttttctcatgtgttag
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TTACTTGGATTATCCGAGTCTCTGTCGCCTCTCCATGACAAATTCGTTGATGCGAAAGGCTGCGAATGATGATAATGCTTGGAAGGCCCTTTATCACAAGgtatacaatattacta-ttactcaattctaattctcgtgcttctttttattgttcagttgtttgttaccttatgctaaatagacccccaaaa--tcgtgaatg------------------------------------------------------------------
upper sequence: AT4G10925.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA05G36770.1 (Glycine max), 5'ss of exon 1
TTACTTGGATTATCCCAGTCTCTGTCGCTTATCCATGACTAATTCCTTGATGAGGAAAGCTGCTAATGATGATAATGCTTGGAAAGCTCTTTATCACAAGgtaattagattcactaatcactcatttgtattagctttgtgtattggaaattcagaaatgattctaggttaaaagatgtgtattcttagcagtttctggattagtgtgtgttttcgtgaatggtgctattttgtttaatgcttctcttacttttttctcatgtgttag
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TTACTTGGATTATCCCAGTCTCTGTCGCCTCTCGATGACCAATTCGTTGATGCGAAAGGCTGCGAATGATGATAATGCTTGGAAGGCCCTTTATCACAAGgtatttacatatatta-ttactcaattctaat--tctcgtgcttct----tttaactgttatcttatgctaaa-----tagacacccaaaa--tcgtgaatgagtgactgttag------------------------------------------------------
upper sequence: AT4G10925.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv09s0018g01810.t01 (Vitis vinifera), 5'ss of exon 1
TTACTTGGATTATCCCAGTCTCTGTCGCTTATCCATGACTAATTCCTTGATGAGGAAAGCTGCTAATGATGATAATGCTTGGAAAGCTCTTTATCACAAGgtaattagattcactaatcactcatttgtattagctttgtgtattggaaattcagaaatgattctaggttaaaagatgtgtattcttagcagtttctggattagtgtgtgttttcgtgaatggtgctattttgtttaatgcttctcttacttttttctcatgtgttag
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TTACTTGGATTATCCGAGTCTAAGCCGGCTTTCGATGACCAATTCGTTAATGCGAAAGGCTGCGAATGATGATAATGCATGGAAAGCGCTCTATTACAAGgtgatttc-tttgttttttgc-catgcatgtttgcatttagaactt---atttatgtttgtttct--gttgaatttcgagtttcttgtggtgttattcaactaattt-------------------------------------------------------------
upper sequence: AT4G10925.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv02s0025g01680.t01 (Vitis vinifera), 5'ss of exon 2
TTACTTGGATTATCCCAGTCTCTGTCGCTTATCCATGACTAATTCCTTGATGAGGAAAGCTGCTAATGATGATAATGCTTGGAAAGCTCTTTATCACAAGgtaattagattcactaatcactcatttgtattagctttgtgtattggaaattcagaaatgattctaggttaaaagatgtgtattcttagcagtttctggattagtgtgtgttttcgtgaatggtgctattttgtttaatgcttctcttacttttttctcatgtgttag
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TTACTTGGATTATCCGAGTCTGTGCCGGCTTTCGATGACCAATTCGTTAATGCGGAAGGCTGCGAATGATGATAATGCATGGAAAGCGCTATATCACAAGgtgatttc-tttgttctttgc-catgcatgtttgtattttgaactt---atttatgtttgtttct--gttgaatttcgagtttcttgtggttttattcaactaattt-------------------------------------------------------------
upper sequence: AT4G10925.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv00s0131g00330.t01 (Vitis vinifera), 5'ss of exon 1
TTACTTGGATTATCCCAGTCTCTGTCGCTTATCCATGACTAATTCCTTGATGAGGAAAGCTGCTAATGATGATAATGCTTGGAAAGCTCTTTATCACAAGgtaattagattcactaatcactcatttgtattagctttgtgtattggaaattcagaaatgat--tctaggttaaaagatgtgtattcttagcagtttctggattagtgtgtgttttcgtgaatggtgctattttgtttaatgcttctcttacttttttctcatgtgttag
|||||||||||||| ||||| || || | || ||||| ||||| || ||| |||| |||| |||||||||||||| |||||||| || ||||||||||| ||| || | || |||| | | | |||||| || | | ||| | | | ||| || | || | | | ||| | | || | |
TTACTTGGATTATCTGAGTCTATGCCGGCTTTCGATGACCAATTCATTAATGTGGAAGTCTGCGAATGATGATAATGCATGGAAAGCGCTCTATCACAAGgtgatt----tctttgttc-----tttgccatgcatgtttgtatttagaacttatttatgttggtttttgttgaatttcgagtttcttgtggtgttattcaactaattt-------------------------------------------------------------
upper sequence: AT4G10925.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv16s0039g00850.t01 (Vitis vinifera), 5'ss of exon 1
TTACTTGGATTATCCCAGTCTCTGTCGCTTATCCATGACTAATTCCTTGATGAGGAAAGCTGCTAATGATGATAATGCTTGGAAAGCTCTTTATCACAAGgtaattagattcactaatcactcatttgtattagctttgtgtattggaaattcagaaatgattctaggttaaaagatgtgtattcttagcagtttctggattagtgtgtgttttcgtgaatggtgctattttgtttaatgcttctcttacttttttctcatgtgttag
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TTACTTGGATTATCCGAGTCTATGCCGGCTTTTGATGACCAATTCGTTAATGCGGAAGGCTGCGAATGATGATAATGCATGGAAAGCACTCTATCACAAGgtgatttc-tttgttctttgc-catgcatgtttgtatttagaactt---atttatgtttgtttct--gttgaatttcgagtttcttgtggtgttattcaactaattt-------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19877783|gb|AU238614.1|AU238614EST: TGAGGAAAGCTGCTAATGATGATAATGCTTGGAAAGCTCTTTATCACAAG GATTTTACTCTGGAGCAAGATGGTATAACACCAGTCAATGGGTGGAAAGAG
genomic: TGAGGAAAGCTGCTAATGATGATAATGCTTGGAAAGCTCTTTATCACAAGgtaattagat ... catgtgttagGATTTTACTCTGGAGCAAGATGGTATAACACCAGTCAATGGGTGGAAAGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTACTTGGATTATCCCAGTCTCTGTCGCTTATCCATGACTAATTCCTTGATGAGGAAAGCTGCTAATGATGATAATGCTTGGAAAGCTCTTTATCACAAGgtaattagattcactaatcactcatttgtattagctttgtgtattggaaattcagaaatgattctaggttaaaagatgtgtattcttagcagtttctggattagtgtgtgttttcgtgaatggtgctattttgtttaatgcttctcttacttttttctcatgtgttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT