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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtcacctttcaagctccttcttctgtaggttttttctgttcttctgattcatgtttacaaagttttttttatgtctcttctaacttcttctccttctcgccgcgtaatcagTCCTTATTGTTCTTCATAATCGCAGTACCAATCGCAATCGTTTTCTTCCTCTCTCGATCTGTTCCTCGGACGAGAAAACTGGACAACAAACCTATGCCGT

Basic information

species Arabidopsis thaliana
transcript AT4G10925.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19877783|gb|AU238614.1|AU238614
EST:     TTCAATTTGTAGGGTTTCTGCAGAAGAAGGAAACCACCATTAAACCCTAA                         TCCTTATTGTTCTTCATAATCGCAGTACCAATCGCAATCGTTTTCTTCCTC
genomic: TTCAATTTGTAGGGTTTCTGCAGAAGAAGGAAACCACCATTAAACCCTAAgtacgtcacc ... gcgtaatcagTCCTTATTGTTCTTCATAATCGCAGTACCAATCGCAATCGTTTTCTTCCTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acaaagttttttttatgtctcttctaacttcttctccttctcgccgcgtaatcagTCCTTATTGTTCTTCATAATCGCAGTACCAATCGCAATCGTTTTCTTCCTCTCTCGATCTGTTCCTCGGACGAGAAAACTGGACAACAAACCTATGCCGT
                     ttctaac  putative branch site (score: 1)
                 tctcttctaacttctt  CT-rich tract
      ttttttttatgtct  TA-rich tract