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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattagattcactaatcactcatttgtattagctttgtgtattggaaattcagaaatgattctaggttaaaagatgtgtattcttagcagtttctggattagtgtgtgttttcgtgaatggtgctattttgtttaatgcttctcttacttttttctcatgtgttagGATTTTACTCTGGAGCAAGATGGTATAACACCAGTCAATGGGTGGAAAGAGTACTATGCAACTACTAGAGCGATTATTAGTGTGAATACGGAATTCTTCA

Basic information

species Arabidopsis thaliana
transcript AT4G10925.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19877783|gb|AU238614.1|AU238614
EST:     TGAGGAAAGCTGCTAATGATGATAATGCTTGGAAAGCTCTTTATCACAAG                         GATTTTACTCTGGAGCAAGATGGTATAACACCAGTCAATGGGTGGAAAGAG
genomic: TGAGGAAAGCTGCTAATGATGATAATGCTTGGAAAGCTCTTTATCACAAGgtaattagat ... catgtgttagGATTTTACTCTGGAGCAAGATGGTATAACACCAGTCAATGGGTGGAAAGAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgtgaatggtgctattttgtttaatgcttctcttacttttttctcatgtgttagGATTTTACTCTGGAGCAAGATGGTATAACACCAGTCAATGGGTGGAAAGAGTACTATGCAACTACTAGAGCGATTATTAGTGTGAATACGGAATTCTTCA
                              ctcttac  putative branch site (score: 3)
                         tgcttctcttactttt  CT-rich tract
             tattttgtttaat  TA-rich tract