Sequence
atgc intronic sequence ATGC exonic sequenceGCTAAGAGAATGGATGTTGTTTGGGGAGAAACGGCTGGAGTTGATGGACAACTATGGCTGTTATGTCCTATACTGTTCATTTTACAGgtgagcttttttctgtacatagatgaatcaagtttatgctaaaacattttaacgcgtttcatttgctctaccgtggcaccatgctagagtggtttactga...
Basic information
species | Arabidopsis thaliana |
transcript | AT4G10430.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G10430.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA10G44190.3 (Glycine max), 5'ss of exon 7
GCTAAGAGAATGGATGTTGTTTGGGGAGAAACGGCTGGAGTTGATGGACAACTATGGCTGTTATGTCCTATACTGTTCATTTTACAGgtgagcttttttctgtacat-agatgaatcaagtttatg-cta-aaacattttaacgcgtttcatttgctctaccgtggcaccatgctaga-gtggtttactga
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GCTAAGAGGATGGATGTTGTGTGGGGGGAAACAGCTGGTGTGGATGGCCAACTGTGGCTGTTGTGTCCTATACTTTTCACATTGCAGgtaacatggctgttatatgtcacttaagttatatgtgtgactatgagccggtcttttattctcatgtgatat-tcatgttcctataatgttcgtgatttat---
upper sequence: AT4G10430.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA20G38960.2 (Glycine max), 5'ss of exon 8
GCTAAGAGAATGGATGTTGTTTGGGGAGAAACGGCTGGAGTTGATGGACAACTATGGCTGTTATGTCCTATACTGTTCATTTTACAGgtgagcttttttctgt-acatagatgaatcaagtt-tatgctaaaacattttaacgcgtttcatttgctctaccgtggcac-catgctagagtggt-ttactga
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GCTAAGAGGATGGATGTTGTGTGGGGGGAAACAGCTGGTGTGGATGGCCAACTGTGGTTATTGTGTCCCATACTTTTCACGTTGCAGgtaacatggctgctatgatatatgtcacttaagttatatgcatgactatg--agccggttt--tttattctcatgtgatattcatgtttctataacgttcatga
upper sequence: AT4G10430.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv02s0025g03210.t01 (Vitis vinifera), 5'ss of exon 8
GCTAAGAGAATGGATGTTGTTTGGGGAGAAACGGCTGGAGTTGATGGACAACTATGGCTGTTATGTCCTATACTGTTCATTTTACAGgtgagcttttttctgtacata-gatgaatcaa-gtttatgctaaaacattttaacgcgtttcatttgctctaccgtggc-accatgctaga-gtggtttactga
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GCAAAGAGAATGGATGTTGTTTGGGGAGAAACAGCTGGGGTAGATGGTCAATTATGGCTGTTGTGTCCCATACTTTTCATTTTACAGgtgatttaaaatagatcttgacaattaataaatatttacagcataagatttcgtttc-tcccaattatgaatgtgcgtctattatatatgacatattttac---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124930182|gb|EL007656.1|EL007656EST: GAGTTGATGGACAACTATGGCTGTTATGTCCTATACTGTTCATTTTACAG GTGTTTGAAGCATACGTTGG
genomic: GAGTTGATGGACAACTATGGCTGTTATGTCCTATACTGTTCATTTTACAGgtgagctttt ... taaaactcagGTGTTTGAAGCATACGTTGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTAAGAGAATGGATGTTGTTTGGGGAGAAACGGCTGGAGTTGATGGACAACTATGGCTGTTATGTCCTATACTGTTCATTTTACAGgtgagcttttttctgtacatagatgaatcaagtttatgctaaaacattttaacgcgtttcatttgctctaccgtggcaccatgctagagtggtttactga
- - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT