Sequence
atgc intronic sequence ATGC exonic sequencegtaatgcttagacttatatctgtttatgaagactaaaaagttcacaaagtaaatattatatatgacttcaattctgcagAGAGGAGTCCATCTTTTCCTACAATGGGCTATGATGCAAGGTGTCGCCATGCTTTTACAAAACAGATATCAACGCCAAAGATTATACACTCGCATTGCAC
Basic information
| species | Arabidopsis thaliana |
| transcript | AT4G10430.1 |
| intron # | 6 |
| splice site | 3' |
| intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G10430.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: LOC_Os08g05660.1 (Oryza sativa), 3'ss of exon 6
gtaatgcttagacttatatctgtttatgaagactaaaaagttcacaaagtaaatat-tata-tatgacttcaattctgcagAGAGGAGTCCATCTTTTCCTACAATGGGCTATGATGCAAGGTGTCGCCATGCTTTTACAAAACAGATATCAACGCCAAAGATTATACACTCGCATTGCAC--------
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-----gtatgcaattttttttctttcc----actatatactgtacataatgaatgtgcataacctgtatacttattcacagagaggcgtcgagctgtttctgtgctgggccataatgcaaggtttcgccatgatgttgcagAACAGATATCAACGCCAAAGACTATATACTCGGATTGCTTTAGGAAAG
upper sequence: AT4G10430.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA20G38960.2 (Glycine max), 3'ss of exon 6
--------------gtaatgcttagacttatatctgtttatgaagactaaaaagttcacaaagtaaatattatatatgacttcaattc-tgcagAGAGGAGTCCATCTTTTCCTACAATGGGCTATGATGCAAGGTGTCGCCATGCTTTTACAAAACAGATATCAACGCCAAAGATTATACACTCGCATTGCAC
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gttggtttcctagccctgtgcatatagttttttcttcctttttt-atttttaatcatgttgtgtaactattgtttgtctcaataatgcatgcagAGAGGTGTACAACTTTTTCTACAGTGGGCTATGATGCAAGGAGTTGCAATGCTTTTGCAAAACAGATATCAACGCCAAAGACTCTATACTCGTATTGCAT
upper sequence: AT4G10430.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA10G44190.3 (Glycine max), 3'ss of exon 5
------------gtaatgcttagacttatatctgtttatgaagactaaaaagttcacaaagtaaatattatatatgacttcaattc-tgcagAGAGGAGTCCATCTTTTCCTACAATGGGCTATGATGCAAGGTGTCGCCATGCTTTTACAAAACAGATATCAACGCCAAAGATTATACACTCGCATTGCAC
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gttagtttcctagccctgcgcatacagttttttcttcctttttgtttaattatttt--gtgtaactattgtttgtctcaataatgcatgcagAGAGGTGTACAACTTTTTCTACAGTGGGCTATGATGCAAGGAGTTGCAATGCTTTTGCAAAATAGATATCAACGCCAAAGACTTTATACTCGTATTGCAT
upper sequence: AT4G10430.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv02s0025g03210.t01 (Vitis vinifera), 3'ss of exon 6
gtaatgcttagacttatatctgtttatgaagactaaaaagttcacaaagtaaatattatat-atgacttcaattctg--cagAGAGGAGTCCATCTTTTCCTACAATGGGCTATGATGCAAGGTGTCGCCATGCTTTTACAAAACAGATATCAACGCCAAAGATTATACACTCGCATTGCAC
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-------gttactgcatttccatt-ataaattgattaaatttttttatatttatttgataggaccatttaaatcttgtgcagAGAGGGGTACAACTTTTCCTACAATGGGCTATGATGCAAGGAGTTGCTATGCTACTACAAAATAGATATCAACGCCAGAGACTTTATACTCGCATTGCATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124993116|gb|EL065385.1|EL065385EST: TCAGCCTCACATGGGAAATCAAAGGTCAACCAAACTGTGTCCAGAAACAG AGAGGAGTCCATCTTTTCCTACAATGGGCTATGATGCA
genomic: TCAGCCTCACATGGGAAATCAAAGGTCAACCAAACTGTGTCCAGAAACAGgtaatgctta ... aattctgcagAGAGGAGTCCATCTTTTCCTACAATGGGCTATGATGCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatgaagactaaaaagttcacaaagtaaatattatatatgacttcaattctgcagAGAGGAGTCCATCTTTTCCTACAATGGGCTATGATGCAAGGTGTCGCCATGCTTTTACAAAACAGATATCAACGCCAAAGATTATACACTCGCATTGCAC
gactaaa putative branch site (score: 2)
taaaaagttcacaaag TA-rich tract
