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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGCTATATCATCATTATTGTGCCATGGCTATGGCCCTTGTCAGCCTCACATGGGAAATCAAAGGTCAACCAAACTGTGTCCAGAAACAGgtaatgcttagacttatatctgtttatgaagactaaaaagttcacaaagtaaatattatatatgacttcaattctgcag

Basic information

species Arabidopsis thaliana
transcript AT4G10430.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G10430.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA20G38960.2 (Glycine max), 5'ss of exon 6
GTGGCTATATCATCATTATTGTGCCATGGCTATGGCCCTTGTCAGCCTCACATGGGAAATCAAAGGTCAACCAAACTGTGTCCAGAAACAGgtaa--tgcttagacttatatct---gtttatgaagactaaaaagttcacaaa--------gtaaatattatatatgacttcaattc-tgcag
|||| ||||||||||||||||||| ||||  |||||||| || || ||||| ||||| || ||||| |||||| ||||||   | || |||||    | | ||| | | |   |   |||| |     ||      ||   ||         |||| |||| | | |  |   ||| | |||||
GTGGATATATCATCATTATTGTGCTATGGTGATGGCCCTCGTGAGTCTCACTTGGGAGATTAAAGGACAACCAGACTGTGCAAAAAAGCAGgttggtttcctagccctgtgcatatagttttttcttccttttttatttttaatcatgttgtgtaactattgtttgtctcaataatgcatgcag

upper sequence: AT4G10430.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv02s0025g03210.t01 (Vitis vinifera), 5'ss of exon 6
GTGGCTATATCATCATTATTGTGCCATGGCTATGGCCCTTGTCAGCCTCACATGGGAAATCAAAGGTCAACCAAACTGTGTCCAGAAACAGgtaatgcttagacttatatctgtttatgaagactaaaaagttcacaaagtaaatattatatatgacttcaattctgcag--
|||| |||| ||||| |||||||| |||  |||||| || || || ||||||||||||||||| || ||||||||||| |  || || ||||| |    |  | ||  ||   | ||    || ||||   ||    |  ||  |  ||   |  | || |||  ||     
GTGGATATACCATCACTATTGTGCTATGATTATGGCTCTCGTTAGTCTCACATGGGAAATCAAGGGACAACCAAACTGCGCACAAAAGCAGgttac---tgcatttccat---tataaattgattaaatttttttatatttatttgata-ggaccatttaaatcttgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124993116|gb|EL065385.1|EL065385
EST:     TCAGCCTCACATGGGAAATCAAAGGTCAACCAAACTGTGTCCAGAAACAG                         AGAGGAGTCCATCTTTTCCTACAATGGGCTATGATGCA
genomic: TCAGCCTCACATGGGAAATCAAAGGTCAACCAAACTGTGTCCAGAAACAGgtaatgctta ... aattctgcagAGAGGAGTCCATCTTTTCCTACAATGGGCTATGATGCA