Sequence
atgc intronic sequence ATGC exonic sequencegtgatgttgttgttagtttgacattttaatcttcgtgtagcttttgtagctctgctgatgctagagttatccgtttggtttctgcagTATGAAGTGGGTGGAGTTGAAGATGACAGAGCTGGGAGTGCTGAACAATCCTAACTACAAGGTCACGGCTCTTCTCGACCATCTTGCAATGATCACGGTC
Basic information
| species | Arabidopsis thaliana |
| transcript | AT4G06599.1 |
| intron # | 4 |
| splice site | 3' |
| intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G06599.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv12s0035g00640.t01 (Vitis vinifera), 3'ss of exon 4
---------gtgatgttgttgttagtttgacattttaatct--tcgtgtagcttttgtagctctgc-tgatgctagagtt-atccgtttggtttctgcagTATGAAGTGGGTGGAGTTGAAGATGACAGAGCTGGGAGTGCTGAACAATCCTAACTACAAGGTCACGGCTCTTCTCGACCATCTTGCAATGATCACGGTC
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tgtccttaaatggaagtgcctttcaattgaggtgcctgttgaatcatttttcccttagggggatatatgatgctatagttgatctgtttcctatctgcagCATGAAGTGGGTTGAATTGAAGATGGGACAACTTGGGGTACTCAACAATCCTAATTACAAGATTACAGCTCTTCTGGACCATTTAGCAATGATTACAGTTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86077946|gb|DR373703.1|DR373703EST: CTTACTGCTGCTTATGCGGAATATGATATCATGATTTGGTCTGCTACCAG TATGAAGTGGGTGGAGTTGAAGATGACAGAGCTGGGAGTGCTGAACAATCC
genomic: CTTACTGCTGCTTATGCGGAATATGATATCATGATTTGGTCTGCTACCAGgtgatgttgt ... gtttctgcagTATGAAGTGGGTGGAGTTGAAGATGACAGAGCTGGGAGTGCTGAACAATCC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcgtgtagcttttgtagctctgctgatgctagagttatccgtttggtttctgcagTATGAAGTGGGTGGAGTTGAAGATGACAGAGCTGGGAGTGCTGAACAATCCTAACTACAAGGTCACGGCTCTTCTCGACCATCTTGCAATGATCACGGTC
tgctgat putative branch site (score: 3)
tttctgc putative PPT
ttttgta TA-rich tract
