Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAGCTTCTTTATCCCAAGATCGGAAACAAACTCTCTGACGATTCTCTTTTACTCTCTTCGATCTCCTTTAAGCCCTCCCTCAAGATGACAATGATCGGgtcagtctcaatttcaatttcttaaaaccctaacgaaatcgaatctaatttgaaatcagttttgacttttttcag

Basic information

species Arabidopsis thaliana
transcript AT4G06599.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86041605|gb|DR337360.1|DR337360
EST:     TTACTCTCTTCGATCTCCTTTAAGCCCTCCCTCAAGATGACAATGATCGA                         TACTGTTGGAAGATGATATAATAGTAGATCAAGCTGAATCTCCTGAAATTG
genomic: TTACTCTCTTCGATCTCCTTTAAGCCCTCCCTCAAGATGACAATGATCGGgtcagtctca ... cttttttcagTACTGTTG-AAGATGATATAATAGTAGATCAAGCTGAATCTCCTGAAATTG
EST: gi|86041604|gb|DR337359.1|DR337359
EST:     TTACTCTCTTCGATCTCCTTTAAGCCCTCCCTCAAGATGACAATGATCGG                         TACTGTTGAAGATGATATAATAGTAGATCAAGCTGAATCTCCTGAAATTGT
genomic: TTACTCTCTTCGATCTCCTTTAAGCCCTCCCTCAAGATGACAATGATCGGgtcagtctca ... cttttttcagTACTGTTGAAGATGATATAATAGTAGATCAAGCTGAATCTCCTGAAATTGT
EST: gi|86041596|gb|DR337351.1|DR337351
EST:     TTACTCTCTTCGATCTCCTTTAAGCCCTCCCTCAAGATGACAATGATCGG                         TACTGTTGAAGATGATATAATAGTAGATCAAGCTGAATCTCCTGAAATTGT
genomic: TTACTCTCTTCGATCTCCTTTAAGCCCTCCCTCAAGATGACAATGATCGGgtcagtctca ... cttttttcagTACTGTTGAAGATGATATAATAGTAGATCAAGCTGAATCTCCTGAAATTGT
EST: gi|86041603|gb|DR337358.1|DR337358
EST:     TTACTCTCTTCGATCTCCTTTAAGCCCTCCCTCAAGATGACAATGATCGG                         TACTGTTGAAGTATGATATAATAGTAGATCAAGCTGAATCTCCTGAAATTG
genomic: TTACTCTCTTCGATCTCCTTTAAGCCCTCCCTCAAGATGACAATGATCGGgtcagtctca ... cttttttcagTACTGTTGAAG-ATGATATAATAGTAGATCAAGCTGAATCTCCTGAAATTG
EST: gi|86041599|gb|DR337354.1|DR337354
EST:     TTACTCTCTTCGATCTCCTTTAAGCCCTCCCTCAAGATGACAATGATCGG                         TACTGTTGAAGATGATATAATAGTAGATCAAGCTGAATCTCCTGAAATTGT
genomic: TTACTCTCTTCGATCTCCTTTAAGCCCTCCCTCAAGATGACAATGATCGGgtcagtctca ... cttttttcagTACTGTTGAAGATGATATAATAGTAGATCAAGCTGAATCTCCTGAAATTGT
EST: gi|86041594|gb|DR337349.1|DR337349
EST:     TTACTCTCTTCGATCTCCTTTAAGCCCTCCCTCAAGATGACAATGATCGG                         TACTGTTGAAGATGATATAATAGTAGATCAAGCTGAATCTCCTGAAATTGT
genomic: TTACTCTCTTCGATCTCCTTTAAGCCCTCCCTCAAGATGACAATGATCGGgtcagtctca ... cttttttcagTACTGTTGAAGATGATATAATAGTAGATCAAGCTGAATCTCCTGAAATTGT
EST: gi|86041600|gb|DR337355.1|DR337355
EST:     TTACTCTCTTCGATCTCCTTTAAGCCCTCCCTCAAGATGACAATGATCGG                         TACTGTTGAAGATGATATAATAGTAGATCAAGCTGAATCTCCTGAAATTGT
genomic: TTACTCTCTTCGATCTCCTTTAAGCCCTCCCTCAAGATGACAATGATCGGgtcagtctca ... cttttttcagTACTGTTGAAGATGATATAATAGTAGATCAAGCTGAATCTCCTGAAATTGT
EST: gi|86041593|gb|DR337348.1|DR337348
EST:     TTACTCTCTTCGATCTCCTTTAAGCCCTCCCTCAAGATGACAATGATCGG                         TACTGTTGAAGATGATATAATAGTAGATCAAGCTGAATCTCCTGAAATTGT
genomic: TTACTCTCTTCGATCTCCTTTAAGCCCTCCCTCAAGATGACAATGATCGGgtcagtctca ... cttttttcagTACTGTTGAAGATGATATAATAGTAGATCAAGCTGAATCTCCTGAAATTGT
EST: gi|86041606|gb|DR337361.1|DR337361
EST:     TTACTCTCTTCGATCTCCTTTAAGCCCTCCCTCAAGATGACAATGATCGG                         TACTGTTGAAGATGATATAATAGTAGATCAAGCTGAATCTCCTGAAATTGT
genomic: TTACTCTCTTCGATCTCCTTTAAGCCCTCCCTCAAGATGACAATGATCGGgtcagtctca ... cttttttcagTACTGTTGAAGATGATATAATAGTAGATCAAGCTGAATCTCCTGAAATTGT
EST: gi|86041598|gb|DR337353.1|DR337353
EST:     TTACTCTCTTCGATCTCCTTTAAGCCCTCCCTCAAGATGACAATGATCGG                         TACTGTTGAAGATGATATAATAGTAGATCAAGCTGAATCTCCTGAAATTGT
genomic: TTACTCTCTTCGATCTCCTTTAAGCCCTCCCTCAAGATGACAATGATCGGgtcagtctca ... cttttttcagTACTGTTGAAGATGATATAATAGTAGATCAAGCTGAATCTCCTGAAATTGT
EST: gi|86041607|gb|DR337362.1|DR337362
EST:     TTACTCTCTTCGATCTCCTTTAAGCCCTCCCTCAAGATGACAATGATCGG                         TACTGTTGAAGATGATATAATAGTAGATCAAGCTGAATCTCCTGAAATTGT
genomic: TTACTCTCTTCGATCTCCTTTAAGCCCTCCCTCAAGATGACAATGATCGGgtcagtctca ... cttttttcagTACTGTTGAAGATGATATAATAGTAGATCAAGCTGAATCTCCTGAAATTGT
EST: gi|86041602|gb|DR337357.1|DR337357
EST:     TTACTCTCTTCGATCTCCTTTAAGCCCTCCCTCAAGATGACAATGATCGG                         TACTGTTGAAGATGATATAATAGTAGATCAAGCTGAATCTCCTGAAATTGT
genomic: TTACTCTCTTCGATCTCCTTTAAGCCCTCCCTCAAGATGACAATGATCGGgtcagtctca ... cttttttcagTACTGTTGAAGATGATATAATAGTAGATCAAGCTGAATCTCCTGAAATTGT
EST: gi|86041597|gb|DR337352.1|DR337352
EST:     TTACTCTCTTCGATCTCCTTTAAGCCCTCCCTCAAGATGACAATGATCGG                         TACTGTTGAAGATGATATAATAGTAGATCAAGCTGAATCTCCTGAAATTGT
genomic: TTACTCTCTTCGATCTCCTTTAAGCCCTCCCTCAAGATGACAATGATCGGgtcagtctca ... cttttttcagTACTGTTGAAGATGATATAATAGTAGATCAAGCTGAATCTCCTGAAATTGT
EST: gi|86041595|gb|DR337350.1|DR337350
EST:     TTACTCTCTTCGATCTCCTTTAAGCCCTCCCTCAAGATGACAATGATCGG                         TACTGTTGAAGATGATATAATAGTAGATCAAGCTGAATCTCCTGAAATTGT
genomic: TTACTCTCTTCGATCTCCTTTAAGCCCTCCCTCAAGATGACAATGATCGGgtcagtctca ... cttttttcagTACTGTTGAAGATGATATAATAGTAGATCAAGCTGAATCTCCTGAAATTGT
EST: gi|86041601|gb|DR337356.1|DR337356
EST:     TTACTCTCTTCGATCTCCTTTAAGCCCTCCCTCAAGATGACAATGATCGG                         TACTGTTGAAGATGATATAATAGTAGATCAAGCTGAATCTCCTGAAATTGT
genomic: TTACTCTCTTCGATCTCCTTTAAGCCCTCCCTCAAGATGACAATGATCGGgtcagtctca ... cttttttcagTACTGTTGAAGATGATATAATAGTAGATCAAGCTGAATCTCCTGAAATTGT
EST: gi|86041592|gb|DR337347.1|DR337347
EST:     TTACTCTCTTCGATCTCCTTTAAGCCCTCCCTCAAGATGACAATGATCGG                         TACTGTTGAAGATGATATAATAGTAGATCAAGCTGAATCTCCTGAAATTGT
genomic: TTACTCTCTTCGATCTCCTTTAAGCCCTCCCTCAAGATGACAATGATCGGgtcagtctca ... cttttttcagTACTGTTGAAGATGATATAATAGTAGATCAAGCTGAATCTCCTGAAATTGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAAAGCTTCTTTATCCCAAGATCGGAAACAAACTCTCTGACGATTCTCTTTTACTCTCTTCGATCTCCTTTAAGCCCTCCCTCAAGATGACAATGATCGGgtcagtctcaatttcaatttcttaaaaccctaacgaaatcgaatctaatttgaaatcagttttgacttttttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG