1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagttttttttttctgtgtgtgtatctatgtgtaaatgattcatcaagcttatacaacaatgtgcagATAAATCTTCGAACGCCATGTCGTCAAGGCAAGAAACTTCTTGTTTTAGATATCGACTATACATTGTTCGATCATCGGTCCACCGCGGAGAATCCGTTGC
species | Arabidopsis thaliana |
transcript | AT4G06599.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATAANGAAGTTAATAA-CAGAAGTTGAGAAGAAGAATTGATCAATACAMG NTAAATCTTCGAACGCCATGTCGTCAAGGCA-GAAACTTCTTEST: gi|86041596|gb|DR337351.1|DR337351
genomic: ATAAAGAAGTTAATAAACAGAAGTTGAGAAGAAGAATTGATCAATACAAGgtgagttttt ... caatgtgcagATAAATCTTCGAACGCCATGTCGTCAAGGCAAGAAACTTCTT
EST: ATAAAGAAGTTAATAAACAGAAGTTGAGAAGAAGAATTGATCAATACAAG ATAAATCTTCGAACGCCATGTCGTCAAGGCA-GAAACTTCTTGTTTTTAGAEST: gi|86041594|gb|DR337349.1|DR337349
genomic: ATAAAGAAGTTAATAAACAGAAGTTGAGAAGAAGAATTGATCAATACAAGgtgagttttt ... caatgtgcagATAAATCTTCGAACGCCATGTCGTCAAGGCAAGAAACTTCTTGTTTT-AGA
EST: ATAAAGAAGTTAATAAACAGAAGTTGAGAAGAAGAATTGATCAATACAAG ATAAATCTTCGGACGCCATGTCGTEST: gi|86041600|gb|DR337355.1|DR337355
genomic: ATAAAGAAGTTAATAAACAGAAGTTGAGAAGAAGAATTGATCAATACAAGgtgagttttt ... caatgtgcagATAAATCTTCGAACGCCATGTCGT
EST: ATAAAGAAGTTAATAAACAGAAGTTGAGAAGAAGAATTGATCAATACAAG ATAAATCTTCGAACGCCATGTCGTCAAGGCAAGAAACTTCTTGTTTTAGATEST: gi|86041593|gb|DR337348.1|DR337348
genomic: ATAAAGAAGTTAATAAACAGAAGTTGAGAAGAAGAATTGATCAATACAAGgtgagttttt ... caatgtgcagATAAATCTTCGAACGCCATGTCGTCAAGGCAAGAAACTTCTTGTTTTAGAT
EST: ATAAAGAAGTTAATAAACAGAAGTTGAGAAGAAGAATTGATCAATACAAG ATAAATCTTCGAACGCCATGTCGTCAAGGCAAGAAACTTCTTGTTTTAGATEST: gi|86041598|gb|DR337353.1|DR337353
genomic: ATAAAGAAGTTAATAAACAGAAGTTGAGAAGAAGAATTGATCAATACAAGgtgagttttt ... caatgtgcagATAAATCTTCGAACGCCATGTCGTCAAGGCAAGAAACTTCTTGTTTTAGAT
EST: ATAAAGAAGTTAATAAACAGAAGTTGAGAAGAAGAATTGATCAATACAAG ATAAATCTTCGAACGCCATGTCGTCAAGGCAAGAAACTTCTTGTTTTAGATEST: gi|86041607|gb|DR337362.1|DR337362
genomic: ATAAAGAAGTTAATAAACAGAAGTTGAGAAGAAGAATTGATCAATACAAGgtgagttttt ... caatgtgcagATAAATCTTCGAACGCCATGTCGTCAAGGCAAGAAACTTCTTGTTTTAGAT
EST: ATAAAGAAGTTAATAAACAGAAGTTGAGAAGAAGAATTAATCAATACAAG ATAAATCTTCGAACGCCATGTCGTCAAGGCAAGAAACTTCTTGTTTTAGATEST: gi|86041597|gb|DR337352.1|DR337352
genomic: ATAAAGAAGTTAATAAACAGAAGTTGAGAAGAAGAATTGATCAATACAAGgtgagttttt ... caatgtgcagATAAATCTTCGAACGCCATGTCGTCAAGGCAAGAAACTTCTTGTTTTAGAT
EST: ATAAAGAAGTTAATAAACAGAAGTTGAGAAGAAGAATTGATCAATACAAG ATAAATCTTCGAACGCCATGTCGTCEST: gi|86041595|gb|DR337350.1|DR337350
genomic: ATAAAGAAGTTAATAAACAGAAGTTGAGAAGAAGAATTGATCAATACAAGgtgagttttt ... caatgtgcagATAAATCTTCGAACGCCATGTCGTC
EST: ATAAAGAAGTTAATAAACAGAAGTTGAGAAGAAGAATTGATCAATACAAG ATAAATCTTCGAACGCCATGTCGTCAAGGCAAGAAACTTCTTGTTTTAGATEST: gi|86041592|gb|DR337347.1|DR337347
genomic: ATAAAGAAGTTAATAAACAGAAGTTGAGAAGAAGAATTGATCAATACAAGgtgagttttt ... caatgtgcagATAAATCTTCGAACGCCATGTCGTCAAGGCAAGAAACTTCTTGTTTTAGAT
EST: ATAAAGAAGTTAATAAACAGAAGTTGAGAAGAAGNNNTGATCAATACAAG ATAAATCTTCGAACGCCATGTCGTCAAGGCAAGAAACTTCTTGTTTTAGAT
genomic: ATAAAGAAGTTAATAAACAGAAGTTGAGAAGAAGAATTGATCAATACAAGgtgagttttt ... caatgtgcagATAAATCTTCGAACGCCATGTCGTCAAGGCAAGAAACTTCTTGTTTTAGAT
tctgtgtgtgtatctatgtgtaaatgattcatcaagcttatacaacaatgtgcagATAAATCTTCGAACGCCATGTCGTCAAGGCAAGAAACTTCTTGTTTTAGATATCGACTATACATTGTTCGATCATCGGTCCACCGCGGAGAATCCGTTGC
taaatgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttttttttttctgtgtgtgtatctatgtgtaaatgattcatcaagcttatacaacaatgtgcagATAAATCTTCGAACGCCATGTCGTCAAGGCAAGAAACTTCTTGTTTTAGATATCGACTATACATTGTTCGATCATCGGTCCACCGCGGAGAATCCGTTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA