Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcattgcataaaatgagaaacttgaaacttgattttaaatgtggtagctttttgattgcataaccaggtttcgtaacttaatttggggtatgttgtgcagATTTTGTTCCCATTAGGGAGGGTATCAGTGATGATCTATGGTTGTTTGGTATCGATAATATTCTGCGGATACATAGTTTACGATACAGACAATCTGATCA

Basic information

species Arabidopsis thaliana
transcript AT4G02690.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116380786|gb|EG423378.1|EG423378
EST:     CCTTCTTGTTTGGCGCTCTCACCGTGCTTATTTTCTTCGCCTTAATACAA                         ATTTTGTTCCCATTAGGGAGGGTATCAGTGATGATCTATGGTTGTTTGGTA
genomic: CCTTCTTGTTTGGCGCTCTCACCGTGCTTATTTTCTTCGCCTTAATACAAgtaaagctac ... tgttgtgcagATTTTGTTCCCATTAGGGAGGGTATCAGTGATGATCTATGGTTGTTTGGTA
EST: gi|116380811|gb|EG423403.1|EG423403
EST:     CCTTCTTGTTTGGCGCTCTCACCGTGCTTATTTTCTTCGCCTTAATACAA                         ATTTTGTTCCCATTAGGGAGGGTATCAGTGATGATCTATGGTTGTTTGGTA
genomic: CCTTCTTGTTTGGCGCTCTCACCGTGCTTATTTTCTTCGCCTTAATACAAgtaaagctac ... tgttgtgcagATTTTGTTCCCATTAGGGAGGGTATCAGTGATGATCTATGGTTGTTTGGTA
EST: gi|116380809|gb|EG423401.1|EG423401
EST:     CCTTCTTGTTTGGCGCTCTCACCGTGCTTATTTTCTTCGCCTTAATACAA                         ATTTTGTTCCCATTAGGGAGGGTATCAGTGATGATCTATGGTTGTTTGGTA
genomic: CCTTCTTGTTTGGCGCTCTCACCGTGCTTATTTTCTTCGCCTTAATACAAgtaaagctac ... tgttgtgcagATTTTGTTCCCATTAGGGAGGGTATCAGTGATGATCTATGGTTGTTTGGTA
EST: gi|116380817|gb|EG423409.1|EG423409
EST:     CCTTCTTGTTTGGCGCTCTCACCGTGCTTATTTTCTTCGCCTTAATACAA                         ATTTTGTTCCCATTAGGGAGGGTATCAGTGATGATCTATGGTTGTTTGGTA
genomic: CCTTCTTGTTTGGCGCTCTCACCGTGCTTATTTTCTTCGCCTTAATACAAgtaaagctac ... tgttgtgcagATTTTGTTCCCATTAGGGAGGGTATCAGTGATGATCTATGGTTGTTTGGTA
EST: gi|116380800|gb|EG423392.1|EG423392
EST:     CCTTCTTGTTTGGCGCTCTCACCGTGCTTATTTTCTTCGCCTTAATACAA                         ATTTTGTTCCCATTAGGGAGGGTATCAGTGATGATCTATGGTTGTTTGGTA
genomic: CCTTCTTGTTTGGCGCTCTCACCGTGCTTATTTTCTTCGCCTTAATACAAgtaaagctac ... tgttgtgcagATTTTGTTCCCATTAGGGAGGGTATCAGTGATGATCTATGGTTGTTTGGTA
EST: gi|116380781|gb|EG423373.1|EG423373
EST:     CCTTCTTGTTTGGCGCTCTCACCGTGCTTATTTTCTTCGCCTTAATACAA                         ATTTTGTTCCCATTAGGGAGGGTATCAGTGATGATCTATGGTTGTTTGGTA
genomic: CCTTCTTGTTTGGCGCTCTCACCGTGCTTATTTTCTTCGCCTTAATACAAgtaaagctac ... tgttgtgcagATTTTGTTCCCATTAGGGAGGGTATCAGTGATGATCTATGGTTGTTTGGTA
EST: gi|116380804|gb|EG423396.1|EG423396
EST:     CCTTCTTGTTTGGCGCTCTCACCGTGCTTATTTTCTTCGCCTTAATACAA                         ATTTTGTTCCCATTAGGGAGGGTATCAGTGATGATCTATGGTTGTTTGGTA
genomic: CCTTCTTGTTTGGCGCTCTCACCGTGCTTATTTTCTTCGCCTTAATACAAgtaaagctac ... tgttgtgcagATTTTGTTCCCATTAGGGAGGGTATCAGTGATGATCTATGGTTGTTTGGTA
EST: gi|116380798|gb|EG423390.1|EG423390
EST:     CCTTCTTGTTTGGCGCTCTCACCGTGCTTATTTTCTTCGCCTTAATACAA                         ATTTTGTTCCCATTAGGGAGGGTATCAGTGATGATCTATGGTTGTTTGGTA
genomic: CCTTCTTGTTTGGCGCTCTCACCGTGCTTATTTTCTTCGCCTTAATACAAgtaaagctac ... tgttgtgcagATTTTGTTCCCATTAGGGAGGGTATCAGTGATGATCTATGGTTGTTTGGTA
EST: gi|116380787|gb|EG423379.1|EG423379
EST:     CCTTCTTGTTTGGCGCTCTCACCGTGCTTATTTTCTTCGCCTTAATACAA                         ATTTTGTTCCCATTAGGGAGGGTATCAGTGATGATCTATGGTTGTTTGGTA
genomic: CCTTCTTGTTTGGCGCTCTCACCGTGCTTATTTTCTTCGCCTTAATACAAgtaaagctac ... tgttgtgcagATTTTGTTCCCATTAGGGAGGGTATCAGTGATGATCTATGGTTGTTTGGTA
EST: gi|116380819|gb|EG423411.1|EG423411
EST:     CCTTCTTGTTTGGCGCTCTCACCGTGCTTATTTTCTTCGCCTTAATACAA                         ATTTTGTTCCCATTAGGGAGGGTATCAGTGATGATCTATGGTTGTTTGGTA
genomic: CCTTCTTGTTTGGCGCTCTCACCGTGCTTATTTTCTTCGCCTTAATACAAgtaaagctac ... tgttgtgcagATTTTGTTCCCATTAGGGAGGGTATCAGTGATGATCTATGGTTGTTTGGTA
EST: gi|116380788|gb|EG423380.1|EG423380
EST:     CCTTCTTGTTTGGCGCTCTCACCGTGCTTATTTTCTTCGCCTTAATACAA                         ATTTTGTTCCCATTAGGGAGGGTATCAGTGATGATCTATGGTTGTTTGGTA
genomic: CCTTCTTGTTTGGCGCTCTCACCGTGCTTATTTTCTTCGCCTTAATACAAgtaaagctac ... tgttgtgcagATTTTGTTCCCATTAGGGAGGGTATCAGTGATGATCTATGGTTGTTTGGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agctttttgattgcataaccaggtttcgtaacttaatttggggtatgttgtgcagATTTTGTTCCCATTAGGGAGGGTATCAGTGATGATCTATGGTTGTTTGGTATCGATAATATTCTGCGGATACATAGTTTACGATACAGACAATCTGATCA
                            taacttaattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gcattgcataaaatgagaaacttgaaacttgattttaaatgtggtagctttttgattgcataaccaggtttcgtaacttaatttggggtatgttgtgcagATTTTGTTCCCATTAGGGAGGGTATCAGTGATGATCTATGGTTGTTTGGTATCGATAATATTCTGCGGATACATAGTTTACGATACAGACAATCTGATCA

- - - cataaaa
- - - - - - - gagaaac
- - - - - - - - - - -ttgaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtttcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatttgg