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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGCCACGGTGGTCACCGTCCGTCCAATCGCTCTGTTCTTCGCCACCACCGGACTTGGATTAGCTCTTTACATAGTCATCATCATCACACCTCTCATAGgtacaatcatcacgcacacttgttttacaaatcaaaagtttcaatctttttcgaagtttggtaataatctcaaaagctgaaacttggatttgtgtttctctccgatgtatag

Basic information

species Arabidopsis thaliana
transcript AT4G02690.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116382159|gb|EG424751.1|EG424751
EST:     CGGACTTGGATTAGCTCTTTACATAGTCATCATCATCACACCTCTCATAG                         TGTTGTGTCCGTTGTACTATTACCATCAGAAACATCCGGTGAATTACTTGC
genomic: CGGACTTGGATTAGCTCTTTACATAGTCATCATCATCACACCTCTCATAGgtacaatcat ... cgatgtatagTGTTGTGTCCGTTGTACTATTACCATCAGAAACATCCGGTGAATTACTTGC
EST: gi|116382161|gb|EG424753.1|EG424753
EST:     CGGACTTGGATTAGCTCTTTACATAGTCATCATCATCACACCTCTCATAG                         TGTTGTGTCCGTTGTACTATTACCATCAGAAACATCCGGTGAATTACTTGC
genomic: CGGACTTGGATTAGCTCTTTACATAGTCATCATCATCACACCTCTCATAGgtacaatcat ... cgatgtatagTGTTGTGTCCGTTGTACTATTACCATCAGAAACATCCGGTGAATTACTTGC
EST: gi|116380809|gb|EG423401.1|EG423401
EST:     CGGACTTGGATTAGCTCTTTACATAGTCATCATCATCACACCTCTCATAG                         TGTTGTGTCCGTTGTACTATTACCATCAGAAACATCCGGTGAATTACTTGC
genomic: CGGACTTGGATTAGCTCTTTACATAGTCATCATCATCACACCTCTCATAGgtacaatcat ... cgatgtatagTGTTGTGTCCGTTGTACTATTACCATCAGAAACATCCGGTGAATTACTTGC
EST: gi|116380817|gb|EG423409.1|EG423409
EST:     CGGACTTGGATTAGCTCTTTACATAGTCATCATCATCACACCTCTCATAG                         TGTTGTGTCCGTTGTACTATTACCATCAGAAACATCCGGTGAATTACTTGC
genomic: CGGACTTGGATTAGCTCTTTACATAGTCATCATCATCACACCTCTCATAGgtacaatcat ... cgatgtatagTGTTGTGTCCGTTGTACTATTACCATCAGAAACATCCGGTGAATTACTTGC
EST: gi|116380821|gb|EG423413.1|EG423413
EST:     CGGACTTGGATTAGCTCTTTACATAGTCATCATCATCACACCTCTCATAG                         TGTTGTGTCCGTTGTACTATTACCATCAGAAACATCCGGTGAATTACTTGC
genomic: CGGACTTGGATTAGCTCTTTACATAGTCATCATCATCACACCTCTCATAGgtacaatcat ... cgatgtatagTGTTGTGTCCGTTGTACTATTACCATCAGAAACATCCGGTGAATTACTTGC
EST: gi|116380800|gb|EG423392.1|EG423392
EST:     CGGACTTGGATTAGCTCTTTACATAGTCATCATCATCACACCTCTCATAG                         TGTTGTGTCCGTTGTACTATTACCATCAGAAACATCCGGTGAATTACTTGC
genomic: CGGACTTGGATTAGCTCTTTACATAGTCATCATCATCACACCTCTCATAGgtacaatcat ... cgatgtatagTGTTGTGTCCGTTGTACTATTACCATCAGAAACATCCGGTGAATTACTTGC
EST: gi|116380830|gb|EG423422.1|EG423422
EST:     CGGACTTGGATTAGCTCTTTACATAGTCATCATCATCACACCTCTCATAG                         TGTTGTGTCCGTTGTACTATTACCATCAGAAACATCCGGTGAATTACTTAC
genomic: CGGACTTGGATTAGCTCTTTACATAGTCATCATCATCACACCTCTCATAGgtacaatcat ... cgatgtatagTGTTGTGTCCGTTGTACTATTACCATCAGAAACATCCGGTGAATTACTTGC
EST: gi|116380823|gb|EG423415.1|EG423415
EST:     CGGACTTGGATTAGCTCTTTACATAGTCATCATCATCACACCTCTCATAG                         TGTTGTGTCCGTTGTACTATTACCATCAGAAACATCCGGTGAATTACTTGC
genomic: CGGACTTGGATTAGCTCTTTACATAGTCATCATCATCACACCTCTCATAGgtacaatcat ... cgatgtatagTGTTGTGTCCGTTGTACTATTACCATCAGAAACATCCGGTGAATTACTTGC
EST: gi|116380781|gb|EG423373.1|EG423373
EST:     CGGACTTGGATTAGCTCTTTACATAGTCATCATCATCACACCTCTCATAG                         TGTTGTGTCCGTTGTACTATTACCATCAGAAACATCCGGTGAATTACTTGC
genomic: CGGACTTGGATTAGCTCTTTACATAGTCATCATCATCACACCTCTCATAGgtacaatcat ... cgatgtatagTGTTGTGTCCGTTGTACTATTACCATCAGAAACATCCGGTGAATTACTTGC
EST: gi|116382158|gb|EG424750.1|EG424750
EST:     GGATAAGCTCTTTACATAGTCATCATCATCACACCTCTCATAG                         TGTTGTGTCCGTTGTACTATTACCATCAGAAACATCCGGTGAATTACTTGC
genomic: GGATTAGCTCTTTACATAGTCATCATCATCACACCTCTCATAGgtacaatcat ... cgatgtatagTGTTGTGTCCGTTGTACTATTACCATCAGAAACATCCGGTGAATTACTTGC
EST: gi|116380804|gb|EG423396.1|EG423396
EST:     CGGACTTGGATTAGCTCTTTACATAGTCATCATCATCACACCTCTCATAG                         TGTTGTGTCCGTTGTACTATTACCATCAGAAACATCCGGTGAATTACTTGC
genomic: CGGACTTGGATTAGCTCTTTACATAGTCATCATCATCACACCTCTCATAGgtacaatcat ... cgatgtatagTGTTGTGTCCGTTGTACTATTACCATCAGAAACATCCGGTGAATTACTTGC
EST: gi|116380843|gb|EG423435.1|EG423435
EST:     CGGACTTGGATTAGCTCTTTACATAGTCATCATCATCACACCTCGCATAG                         TGTTGTGTCCGTTGTACTATTACCATCAGAAACATCCGGTGAATTACTTGC
genomic: CGGACTTGGATTAGCTCTTTACATAGTCATCATCATCACACCTCTCATAGgtacaatcat ... cgatgtatagTGTTGTGTCCGTTGTACTATTACCATCAGAAACATCCGGTGAATTACTTGC
EST: gi|116380832|gb|EG423424.1|EG423424
EST:     CGGACTTGGATTAGCTCTTTACATAGTCATCATCATCACACCTCTCATAG                         TGTTGTGTCCGTTGTACTATTACCATCAGAAACATCCGGTGAATTACTTAC
genomic: CGGACTTGGATTAGCTCTTTACATAGTCATCATCATCACACCTCTCATAGgtacaatcat ... cgatgtatagTGTTGTGTCCGTTGTACTATTACCATCAGAAACATCCGGTGAATTACTTGC
EST: gi|116380841|gb|EG423433.1|EG423433
EST:     CGGACTTGGATTAGCTCTTTACATAGTCATCATCATCACACCTCGCATAG                         TGTTGTGTCCGTTGTACTATTACCATCAGAAACATCCGGTGAATTACTTGC
genomic: CGGACTTGGATTAGCTCTTTACATAGTCATCATCATCACACCTCTCATAGgtacaatcat ... cgatgtatagTGTTGTGTCCGTTGTACTATTACCATCAGAAACATCCGGTGAATTACTTGC
EST: gi|116380819|gb|EG423411.1|EG423411
EST:     CGGACTTGGATTAGCTCTTTACATAGTCATCATCATCACACCTCTCATAG                         TGTTGTGTCCGTTGTACTATTACCATCAGAAACATCCGGTGAATTACTTGC
genomic: CGGACTTGGATTAGCTCTTTACATAGTCATCATCATCACACCTCTCATAGgtacaatcat ... cgatgtatagTGTTGTGTCCGTTGTACTATTACCATCAGAAACATCCGGTGAATTACTTGC
EST: gi|116380788|gb|EG423380.1|EG423380
EST:     CGGACTTGGATTAGCTCTTTACATAGTCATCATCATCACACCTCTCATAG                         TGTTGTGTCCGTTGTACTATTACCATCAGAAACATCCGGTGAATTACTTGC
genomic: CGGACTTGGATTAGCTCTTTACATAGTCATCATCATCACACCTCTCATAGgtacaatcat ... cgatgtatagTGTTGTGTCCGTTGTACTATTACCATCAGAAACATCCGGTGAATTACTTGC