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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCTGATCCTGTGTGGGTTATGAATGTCATTCCAGCTCGGAAGCCATTAACTCTTGACGTGATTTATGACAGAGGTCTCATCGGTGTTTACCATGATTGgttagtcacatttgttgtttatatatttgatcaaaataaagacttagatatgttatctctcttgttctgtatcttagccattggcagcaatgaggatcgaaatatgtcacaattccttaatagtcaaaaccctattatttgtttgttgcag

Basic information

species Arabidopsis thaliana
transcript AT4G00740.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G00740.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G076841_T01 (Zea mays), 5'ss of exon 5
CATCTGATCCTGTGTGGGTTATGAATGTCATTCCAGCTCGGAAGCCATTAACTCTTGACGTGATTTATGACAGAGGTCTCATCGGTGTTTACCATGATTGgtt--agtcacatttgttgtttatatatttgatcaaaataaagacttagatatgttatctctcttgttctgtatcttagccattggcagcaatgaggatcgaaatatgtcacaattccttaatagtcaaaaccctattatttgtttgttgcag
 |||||||||||| ||||||||||||||  |||| | || ||||||||| || ||||  || |||||||| || || || || || ||||| ||||| ||||   | ||  | | | |    ||     ||          | | ||||||||  | ||   |||  ||||||| ||     ||||     ||     |   ||| |  || |                                        
TATCTGATCCTGTATGGGTTATGAATGTTGTTCCTGGTCAGAAGCCATTGACACTTGGAGTTATTTATGATAGGGGCCTTATAGGGGTTTATCATGACTGgtatgaatctaactcgctaccaatgccaatgcc--------acatttagatataatttcaacctt--tctgtattttg----ttggatttcatcttattgataattttacatac---------------------------------------

upper sequence: AT4G00740.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA03G01870.1 (Glycine max), 5'ss of exon 5
CATCTGATCCTGTGTGGGTTATGAATGTCATTCCAGCTCGGAAGCCATTAACTCTTGACGTGATTTATGACAGAGGTCTCATCGGTGTTTACCATGATTGgttagtcacat-ttgttgtttatatatttgatcaaaataaagacttagatatgttatctctcttgttctgtatcttagccattggcagcaatgaggatcgaaatatgtcacaattccttaatagtcaaaaccctattatttgtttgttgcag
  ||||||||||||||||| ||||||||  ||||| |||  |||||| |||||||||| |  || | |||||||||||| || || ||||| |||||||||| |||    |  ||    ||  |  | |       | || | |||   | |||| | ||| |||   |||  ||||  || ||| |  | ||||  | || ||                                                
ATTCTGATCCTGTGTGGGTAATGAATGTTGTTCCATCTCACAAGCCAATAACTCTTGATGCAATCTTTGACAGAGGTCTTATTGGAGTTTATCATGATTGgtgagttttttgctgaaaatttcaagtgtttctcttaaaagggctt---tttgttttatcttttggcttgt--cttaatcaatggtaa-attgagtgttgacatga----------------------------------------------

upper sequence: AT4G00740.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA09G40110.2 (Glycine max), 5'ss of exon 5
CATCTGATCCTGTGTGGGTTATGAATGTCATTCCAGCTCGGAAGCCATTAACTCTTGACGTGATTTATGACAGAGGTCTCATCGGTGTTTACCATGATTGgttagtcacatttgt-tgtttatatatttgatcaaaataaagacttagatatgttatctctcttgttctgtatcttagccattggcagcaatgaggatcgaaatatgtcacaattccttaatagtcaaaaccctattatttgtttgttgcag
 |||||||||||||||||| ||||||||  ||||||| |  ||||||   |||||||| || || | |||||||||||| || || ||||| |||||||||| ||     | ||  |||||   | |||  |      || || |||  |     |||| ||  | |||| |||||     ||| ||    |  | |   |||  | |                                            
AATCTGATCCTGTGTGGGTGATGAATGTAGTTCCAGCACAAAAGCCACCTACTCTTGATGTTATCTTTGACAGAGGTCTTATTGGAGTTTATCATGATTGgtgagctttttctgaatgtttcagtgtttcttgtcttaaaggaatta--tcccgaatctttcaagctctg-atctt-----ttgacacgtcttggaaaataaacttct--------------------------------------------

upper sequence: AT4G00740.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA07G08360.1 (Glycine max), 5'ss of exon 5
CATCTGATCCTGTGTGGGTTATGAATGTCATTCCAGCTCGGAAGCCATTAACTCTTGACGTGATTTATGACAGAGGTCTCATCGGTGTTTACCATGATTGgttagtcacatttgttg----tttatatatttgatcaaaataaagacttagatatgttatctctcttgttctgtatcttagccattggcagcaatgaggatcgaaatatgtcacaattccttaatagtcaaaaccctattatttgtttgttgcag
  ||||||||||||||||| ||||||||  ||||| |||  |||||| |||||||||| |  || | |||||||||||| || || || || |||||||||| |||    |||| ||    ||| ||   ||  ||  || || |||||   | |||||| ||| |||   |||  ||||  || ||| |  | ||||  | || ||                                                
ATTCTGATCCTGTGTGGGTAATGAATGTTGTTCCATCTCACAAGCCAATAACTCTTGATGCAATCTTTGACAGAGGTCTTATTGGAGTCTATCATGATTGgtgagttt--tttgctgaaaatttctagtgtttctcttaa-aaggactt---tttgttatatcttttggcttgt--cttaatcaatggtaa-attgagtgttgatatga----------------------------------------------

upper sequence: AT4G00740.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv15s0048g01990.t01 (Vitis vinifera), 5'ss of exon 5
CATCTGATCCTGTGTGGGTTATGAATGTCATTCCAGCTCGGAAGCCATTAACTCTTGACGTGATTTATGACAGAGGTCTCATCGGTGTTTACCATGATTGgttagtcacatttgttgttta-tatatttgatca--aaataaagacttagatatgtt-atctctcttgttctgta-tcttagccattggcagcaatgaggatcgaaatatgtcacaattccttaatagtcaaaaccctattatttgtttgttgcag
| ||||||||||||||||| ||||||||  ||||  | || ||||||| |||||| |  || ||||||||||||||||| || || || ||||||||||||| ||| || | |||  | |  ||   |||   |   |||||| |   |  |  ||| |  |    |||| |  | || |||  ||| ||  |  | |  ||||                                                    
CGTCTGATCCTGTGTGGGTGATGAATGTTGTTCCTCCCCGCAAGCCATCAACTCTGGGAGTCATTTATGACAGAGGTCTTATTGGGGTCTACCATGATTGgtgagttac-tgtgtcatgtgctactcttgtctacggaataaatatgcacctgggttgaaatgaagtgttttagagtcatag--attagccaccttcat-atcg----------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164207561|gb|ES095004.1|ES095004
EST:     ACTCTTGACGTGATTTATGACAGAGGTCTCATCGGTGTTTACCATGATTG                         GTGTGAACCATTTTCAACATATCCCCGC
genomic: ACTCTTGACGTGATTTATGACAGAGGTCTCATCGGTGTTTACCATGATTGgttagtcaca ... tttgttgcagGTGTGAACCATTTTCAACATATCCCCGC