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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATTTGTTGCCATGCTTGGCACTCGTAGACTCCCCTTTCCTGCATACTCCTTTGACCTGATGCACTGTTCCCGATGTTTGATTCCTTTTACGGCTTACAgtgagtcccttgggttatatacctctacttatgtacgtgtgttgcggtttttagcagcaattattcttattgtgtttggtgatttgtctgcag

Basic information

species Arabidopsis thaliana
transcript AT4G00740.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G00740.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA03G01870.1 (Glycine max), 5'ss of exon 3
GCATTTGTTGCCATGCTTGGCACTCGTAGACTCCCCTTTCCTGCATACTCCTTTGACCTGATGCACTGTTCCCGATGTTTGATTCCTTTTACGGCTTACAgtgagtcccttgggttatatacctctacttatgtacgtgtgttgcggtttttagcagcaattattcttattgtgtttggtgatttgtctgcag
|| ||||||||||||||||| ||||| |||||||| ||||||||||    ||||||| |  | || ||||| || ||||| || |||||||| || |||||| ||| | |      ||      | || | || |  | |       || | |   | ||| | |    |  ||        ||    |||||
GCTTTTGTTGCCATGCTTGGTACTCGCAGACTCCCATTTCCTGCATTTGGCTTTGACTTAGTCCATTGTTCTCGGTGTTTAATCCCTTTTACAGCCTACAgtaagttcttc-----atcactgccgacctttgcatatcttgcaaacttctaaatcgaaataacttccctaatgcagaaaccttgccttgcag

upper sequence: AT4G00740.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA18G45990.1 (Glycine max), 5'ss of exon 3
GCATTTGTTGCCATGCTTGGCACTCGTAGACTCCCCTTTCCTGCATACTCCTTTGACCTGATGCACTGTTCCCGATGTTTGATTCCTTTTACGGCTTACAgtgagtcccttgggttatatacctctacttatgtacgtgtgttgcggtttttagcagcaattattcttattgtgtttggtgatt-tgtct-gcag-
 | |||||||| |||||||||||||| |||||||| |||||||| |     |||||| |  | || || ||  | || ||||| || ||||| || |||||| ||| | |        || |||   |     | ||| | || |  | ||   ||    |   ||||      |   |  | | || || |||| 
-CTTTTGTTGCTATGCTTGGCACTCGCAGACTCCCATTTCCTGCGTTTGGATTTGACTTAGTTCATTGCTCTAGGTGCTTGATCCCATTTACAGCCTACAGtaagttcttc-------attcctgctcactcatgcgtatcttacaatcttctacatgcttgtctcttccctaatgcagcaaatgtgccttgcaga

upper sequence: AT4G00740.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA07G08360.1 (Glycine max), 5'ss of exon 3
GCATTTGTTGCCATGCTTGGCACTCGTAGACTCCCCTTTCCTGCATACTCCTTTGACCTGATGCACTGTTCCCGATGTTTGATTCCTTTTACGGCTTACAgtgagtcccttgggttatatacctctacttatgtacgtgtgttgcggtttttagcagcaattattcttattgtgtttggtgatttgtctgcag
|| ||||||||||||||||| ||||| ||||| || ||||||||||    ||||||| |  | || |||||||| ||||| || |||||||| || |||||| ||| | |    ||  |       || | || |  | |       || | |  ||  || | |    |  ||        ||    |||||
GCTTTTGTTGCCATGCTTGGTACTCGCAGACTTCCATTTCCTGCATTTGGCTTTGACTTAGTCCATTGTTCCCGGTGTTTAATCCCTTTTACAGCCTACAgtaagttctt--aattgcag---ctgacctttgcatatcttgcaaacttctaaatagacatcactgccctaatgcagaaaccttgccttgcag

upper sequence: AT4G00740.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv15s0048g01990.t01 (Vitis vinifera), 5'ss of exon 3
GCATTTGTTGCCATGCTTGGCACTCGTAGACTCCCCTTTCCTGCATACTCCTTTGACCTGATGCACTGTTCCCGATGTTTGATTCCTTTTACGGCTTACAgtgagtcccttgggttatatacctctacttatgtacgtgtgttgcggtttttagcagcaattattcttattgtgtttggtgatttgtctgcag
||| |||| || |||||||||||||||||||| || |||||||||| ||| |||||| || ||||||| || ||||||||||| |||||||| ||||| ||||||| |  |  |  || |  || |    || |||   | || |   || |      | ||  |||  |  |     ||  |   | |||||
GCACTTGTGGCAATGCTTGGCACTCGTAGACTGCCATTTCCTGCATTCTCATTTGACTTGGTGCACTGCTCTCGATGTTTGATCCCTTTTACCGCTTATAgtgagttctatatgcaatgtggctattgaaatttacacttcttac---ttgtcctcctacttgctct-gtaataaaatgttctggatttgcag