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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTCATCTGGAAGAAGCCTGTTGGAGATTCATGTCTACCTAGCCAGAATGAGTTTGGGCTTGAGTTGTGTGATGAGTCTGTTCCGCCAAGTGATGCATGgtgcgtttttcttgttgtataattatgtgcatgtgacttttgaactgtattgaaaccatgtaaaagacaaaattgaagtttttgtttttgttttttttgcctttttcag

Basic information

species Arabidopsis thaliana
transcript AT4G00740.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G00740.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA18G45990.1 (Glycine max), 5'ss of exon 4
CTGTCATCTGGAAGAAGCCTGTTGGAGATTCATGTCTACCTAGCCAGAATGAGTTTGGGCTTGAGTTGTGTGATGAGTCTGTTCCGCCAAGTGATGCATGgtgcgtttt-------tcttgtt-gtataa-----ttatgtgcatgtgacttttgaa-ctgtattgaaaccatgtaaaa--gacaaaattgaagtttttgtttttgttttttttgcctttttcag------------------------------------------------------
 ||| ||||||||||||||||| ||||| |||||||| || |   | ||||| ||||| |||||||| |||||||| || | |   |||||| | || ||||   ||         | ||| | || |||     || |   | | |   | |||   |  | |        | ||  |     | | ||| |  |     ||  ||   |  |||| || | |                                                       
-TGTGATCTGGAAGAAGCCTGTGGGAGAATCATGTCTTCCCAATGAAAATGAATTTGGTCTTGAGTTATGTGATGATTCAGATTACCCAAGTCAAGCTTGGtaatttccagaaaactattgctagtttaagttgtttttcctcttatttttcttgcttccctttctgtcttgtctagcatcagtatatttgtaaatagcacttgggtgaatgctgccattgttaaaagatcttattgattatttcaaaaaatgcaaacctaagttgattgttttacagg

upper sequence: AT4G00740.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv15s0048g01990.t01 (Vitis vinifera), 5'ss of exon 4
CTGTCATCTGGAAGAAGCCTGTTGGAGATTCATGTCTACCTAGCCAGAATGAGTTTGGGCTTGAGTTGTGTGATGAGTCTGTTCCGCCAAGTGATGCATGgtgcgtttttcttgttgtataattatgtgcatgtgacttttgaactgtattgaaaccatgtaaaagacaaaattgaa-gtttttgtttttgttttttttgcctttttcag
|||  |||||||| ||||||| ||| ||||||||||| || | ||| ||||||||||||||||| ||||||||||| |||| |    ||||| |||||||||    ||  |||       ||  ||||     | | || |||  |    |  | | |  || |  |  ||| ||    | | | | | |||  |||||     |   | 
CTGCTATCTGGAAAAAGCCTGCTGGGGATTCATGTCTCCCCAACCAAAATGAGTTTGGGCTTGAATTGTGTGATGAATCTGATGATTCAAGTTATGCATGgtaa--ttgcctt------caaaaatgtattcttaatttctgatttcccctcca-caacttagagtatgaaaatggttatatatatatatgtaattttttgtggtcata-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124884777|gb|EH963679.1|EH963679
EST:     GAGTTTGGGCTTGAGTTGTGTGATGAGTCTGTTCCGCCAAGTGATGCATG                         GTATTTTAAATTGAAG
genomic: GAGTTTGGGCTTGAGTTGTGTGATGAGTCTGTTCCGCCAAGTGATGCATGgtgcgttttt ... cctttttcagGTATTTTAAATTGAAG