Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACTATATATTTTCCACCAACTTACAAATACTCTAACAATTCAGATATTTATGCTGGCGATGATCGCCTTCCCAAGGCCAAGAGACGCACTCCAGCATGgttagtacttatctctctagtctaaattaacttgatggcatatatatcaaacatgctgagtttgttcatctgaatttgtag

Basic information

species Arabidopsis thaliana
transcript AT3G63240.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164175609|gb|ES059896.1|ES059896
EST:     TATGCTGGCGATGATCGACTTCCCAAGGCCAAGAGACGCACTCCAGCATG                         GTGTGATCGCATACTCTGGCACGGG
genomic: TATGCTGGCGATGATCGCCTTCCCAAGGCCAAGAGACGCACTCCAGCATGgttagtactt ... gaatttgtagGTGTGATCGCATACTCTGGCACGGG
EST: gi|116406166|gb|EG448758.1|EG448758
EST:     TATGCTGGCGATGATCGCCTTCCCAAGGCCAAGAGACGCACTCCAGCATG                         GTGTGATCGCATACTTTGGCACGGGAGTGGTATCAGTCAGCTGTCATATGT
genomic: TATGCTGGCGATGATCGCCTTCCCAAGGCCAAGAGACGCACTCCAGCATGgttagtactt ... gaatttgtagGTGTGATCGCATACTCTGGCACGGGAGTGGTATCAGTCAGCTGTCATATGT
EST: gi|124760118|gb|EH850248.1|EH850248
EST:     CACTCCAGCATG                         GTGTGATCGCATACTCTGGCACGGGAGTGGTATCAGTCAGCTGTCATATGT
genomic: CACTCCAGCATGgttagtactt ... gaatttgtagGTGTGATCGCATACTCTGGCACGGGAGTGGTATCAGTCAGCTGTCATATGT
EST: gi|116440047|gb|EG482639.1|EG482639
EST:     TATGCTGGCGATGATCGCCTTCCCAAGGCCAAGAGACGCACTCCAGCATG                         GTGTGATCGCATACTCTGGCACGGGAGTGGTATCAGTCAGCTGTCATATGT
genomic: TATGCTGGCGATGATCGCCTTCCCAAGGCCAAGAGACGCACTCCAGCATGgttagtactt ... gaatttgtagGTGTGATCGCATACTCTGGCACGGGAGTGGTATCAGTCAGCTGTCATATGT
EST: gi|116406167|gb|EG448759.1|EG448759
EST:     TATGCTGGCGATGATCGCCTTCCCAAGGCCAAGAGACGCACTCCAGCATG                         GTGTGATCGCATACTCTGGCACGGGAGTGGTATCAGTCAGCTGTCATATGT
genomic: TATGCTGGCGATGATCGCCTTCCCAAGGCCAAGAGACGCACTCCAGCATGgttagtactt ... gaatttgtagGTGTGATCGCATACTCTGGCACGGGAGTGGTATCAGTCAGCTGTCATATGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGACTATATATTTTCCACCAACTTACAAATACTCTAACAATTCAGATATTTATGCTGGCGATGATCGCCTTCCCAAGGCCAAGAGACGCACTCCAGCATGgttagtacttatctctctagtctaaattaacttgatggcatatatatcaaacatgctgagtttgttcatctgaatttgtag

- - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA