1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CTGGCTTGGAGACTTGAACTACCGTATAGCTCTTTCTTACCGGTCTGCAAAAGCTCTTGTCGAGATGAGAGATTGGAGGGCCTTGCTTGAGAAAGACCAGgtagttccaccattcaaagaccaaagaatttatatttatatgaaagataagaaatttttatctaaatgtcacttttgtttttgttgttgttacag
species | Arabidopsis thaliana |
transcript | AT3G63240.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AAGCTCTTGTCGAGATGAGAGATTGGAGGGCCTTGCTTGAGAAAGACCAG CTACGGATAGAACAACGAAAAGGCTGTGTCTTTGAAGGATGGAAGGAAGGGEST: gi|116406167|gb|EG448759.1|EG448759
genomic: AAGCTCTTGTCGAGATGAGAGATTGGAGGGCCTTGCTTGAGAAAGACCAGgtagttccac ... gttgttacagCTACGGATAGAACAACGAAAAGGCTGTGTCTTTGAAGGATGGAAGGAAGGG
EST: AAGCTCTTGTCGAGATGAGAGATTGGAGGGCCTTGCTTGAGAAAGACCAG CTACGGATAGAACAACGAAAAGGCTGTGTCTTTGAAGGATGGAAGGAAGGG
genomic: AAGCTCTTGTCGAGATGAGAGATTGGAGGGCCTTGCTTGAGAAAGACCAGgtagttccac ... gttgttacagCTACGGATAGAACAACGAAAAGGCTGTGTCTTTGAAGGATGGAAGGAAGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGGCTTGGAGACTTGAACTACCGTATAGCTCTTTCTTACCGGTCTGCAAAAGCTCTTGTCGAGATGAGAGATTGGAGGGCCTTGCTTGAGAAAGACCAGgtagttccaccattcaaagaccaaagaatttatatttatatgaaagataagaaatttttatctaaatgtcacttttgtttttgttgttgttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG