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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAATAGACTTTGTTAAAGCTCTCTGCAAAGTTTCTATGGATGAGTTGCGGTCTCCTTCTAATCCACGCGTTTTTAGCCTCACAAAGATTGTTGAGATAGCgtaagaatctcctagtttcgttcctctctgttctctcatatactgcatataagagacgttctctgttcttagcaactttaagtatgtagtctgacaattttctgtttgtcatttgtgacag

Basic information

species Arabidopsis thaliana
transcript AT3G60860.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G60860.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os03g14260.2 (Oryza sativa), 5'ss of exon 7
TAATAGACTTTGTTAAAGCTCTCTGCAAAGTTTCTATGGATGAGTTGCGGTCTCCTTCTAATCCACGCGTTTTTAGCCTCACAAAGATTGTTGAGATAGCgtaag-----aatctcctagtttcgttcctctctgttctctcatatactgcatataagagacgttctctgttcttagcaactttaagtatgtagtctgacaattttctgtttgtcatttgtgacag
|||| || ||||| || |||||||| |||||||| ||||| || ||||| ||| ||||| ||||||| |||||||| || ||||||||||||||||| |||||||         |||||  |||      |  |||  |  |  |||||   | |  ||    ||    ||   |||  | | || |  ||| || |  |  | |  |||                
TAATTGATTTTGTAAAGGCTCTCTGTAAAGTTTCCATGGAGGAATTGCGATCTGCTTCTGATCCACGGGTTTTTAGTCTGACAAAGATTGTTGAGATTGCgtaagtacagggcttcctatattcagattgcaatgtatttccccatacttt-tctttgatgtatttatagtatataggcagtatatgattgt-gtttccctttctcttgtag--------------

upper sequence: AT3G60860.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G058870_T01 (Zea mays), 5'ss of exon 7
TAATAGACTTTGTTAAAGCTCTCTGCAAAGTTTCTATGGATGAGTTGCGGTCTCCTTCTAATCCACGCGTTTTTAGCCTCACAAAGATTGTTGAGATAGCgtaagaatctcctagtttcgttcctctctgttctctcatatactgcatataagagacgttctctgttcttagcaactttaagtatgtagtctgacaattttctgtttgtcat-ttgtgacag
|||| || ||||| || |||||||| || ||||| ||||| || || || ||  ||||| ||||||| |||||||| || |||||||| || ||||||||||||| |       | ||  ||  ||  |  |   |   |   ||  | |         | |  | |||||   ||    |||   |  | |     |||| | |||| | | ||||     
TAATTGATTTTGTGAAGGCTCTCTGTAAGGTTTCAATGGAGGAATTACGTTCGGCTTCTGATCCACGAGTTTTTAGTCTGACAAAGATAGTCGAGATAGCgtaaggaatctgaggctttatta-tcattactacattgcaatgtgtttttttacatttctgttcggtcttatagac----agtgcatgatttt----ttttttttttgccctcttgtag---

upper sequence: AT3G60860.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA18G45340.1 (Glycine max), 5'ss of exon 7
TAATAGACTTTGTTAAAGCTCTCTGCAAAGTTTCTATGGATGAGTTGCGGTCTCCTTCTAATCCACGCGTTTTTAGCCTCACAAAGATTGTTGAGATAGCgtaagaatctcctagtt--tcgttcctctctgttctctcatat-actgcatataagagacgttctctgttctta-gcaactttaagtatgtagtctgacaattttctgtttgtcatttgtgacag
||||||| |||||||| ||||| ||||| || || ||||| || ||| ||||||| ||| ||||||| ||||| ||||| ||||||||||||||||| ||||| | ||  |  |  |   | |||     || |  ||| | |  |      |  ||    |||| | | || | |   |||   ||   | |  ||                            
TAATAGATTTTGTTAAGGCTCTATGCAAGGTCTCCATGGAGGAATTGAGGTCTCCATCTGATCCACGTGTTTTCAGCCTTACAAAGATTGTTGAGATTGCgtatgtattactcacctaccccttcaaacatgctacctctttttgccttccctctgaatttttctttttcctcatggttcttggggttcattggttgggg-------------------------

upper sequence: AT3G60860.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA01G34560.1 (Glycine max), 5'ss of exon 8
TAATAGACTTTGTTAAAGCTCTCTGCAAAGTTTCTATGGATGAGTTGCGGTCTCCTTCTAATCCACGCGTTTTTAGCCTCACAAAGATTGTTGAGATAGCgtaagaatctcctagtttc--gttcctctctgttctctcatat-actgcatataagagacgttctctgttctta-gcaactttaagtatgtagtctgacaattttctgtttgtcatttgtgacag
||||||| |||||||| ||||| ||||| || || ||||| || ||| ||||||| ||| ||||||| ||||| ||||| ||||||||||||||||| ||||| | ||  |  |  | |   |||     || |  ||| | |  |      |  ||    |||| | | || | |   |||   ||   | |  ||                            
TAATAGATTTTGTTAAGGCTCTATGCAAGGTCTCCATGGAGGAATTGAGGTCTCCATCTGATCCACGTGTTTTCAGCCTTACAAAGATTGTTGAGATTGCgtatgtattactcacctaccacttcaaacatgctacctctttttgccttccctctgaatttttctttttcctcatggttcttgtggttcattggttgggg-------------------------

upper sequence: AT3G60860.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv15s0048g00800.t01 (Vitis vinifera), 5'ss of exon 7
TAATAGACTTTGTTAAAGCTCTCTGCAAAGTTTCTATGGATGAGTTGCGGTCTCCTTCTAATCCACGCGTTTTTAGCCTCACAAAGATTGTTGAGATAGCgtaagaatc--tcctagtttcgttcctctctgttctctcatatactgc--atataagagacgttctctgttcttagcaactttaagtatgtagtctgacaattttctg-----tttgtcatttgtgacag--
|||| ||||||||||| ||||||||||| || ||||| || || ||||| ||| | ||| ||||| | ||||||||||| ||||||||||||||||| ||||| |||||  ||  | |||   |  |   |||| |  ||||   |     |     |    || | | |  ||  || ||   | ||   | | ||  ||  ||||      |||||  | | | |||   
TAATTGACTTTGTTAAGGCTCTCTGCAAGGTCTCTATAGAAGAATTGCGATCTGCATCTGATCCAAGAGTTTTTAGCCTTACAAAGATTGTTGAGATTGCgtatgaatcattctcaatttgtcttgttcatgttttagcataccatattagtgcttcatttattatttatatttgtcagctgctattaaaaattttgctaaaattctaagtgatttgttttcttttacacag