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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTTCGGTTTCTTGACAAACTTTGTTTGGATTCACAAATCCTAGTTGATATATTCTTGAACTACGATTGCGATGTCAATTCATCAAATATCTTTGAGAGgtatgttatgtcccttgatgcttcgctgtttaaagtttaagtttcgttcaggtggaagttctttgcgtaatttatgtttcctctgtatgatcatgtttag

Basic information

species Arabidopsis thaliana
transcript AT3G60860.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G60860.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G058870_T01 (Zea mays), 5'ss of exon 2
TTCTTCGGTTTCTTGACAAACTTTGTTTGGATTCACAAATCCTAGTTGATATATTCTTGAACTACGATTGCGATGTCAATTCATCAAATATCTTTGAGAGgtatgttatgtcccttgatgcttcgctgtttaaagtttaagtttcgttcaggtggaagttctttgcgtaatttatgtttcctctgtatgatcatgtttag
||||||| ||| | || || || |||   ||||| ||||||||||||||||| ||| | || || ||||| |||||| | |||||||| || |||||||||||  |   |      | |   |   || |    ||| |   || |||    |     ||||||  || || |   ||| ||   | |  | |    |||
TTCTTCGTTTTTTGGAAAAGCTCTGTGGTGATTCTCAAATCCTAGTTGATATTTTCCTTAATTATGATTGTGATGTCCACTCATCAAACATATTTGAGAGgtac-tggagcattcagttttcttagtgctctg-gttcagcattagttatatttactattctttttgtgatat---tttacttgatgttttaaccaatag

upper sequence: AT3G60860.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA01G34560.1 (Glycine max), 5'ss of exon 2
TTCTTCGGTTTCTTGACAAACTTTGTTTGGATTCACAAATCCTAGTTGATATATTCTTGAACTACGATTGCGATGTCAATTCATCAAATATCTTTGAGAGgtatgttatgtcccttgatgcttcgctgtttaaagtttaagtttcgttcag-gtggaagttctttgcgtaatttatgtttcctctgtatgatcatgtttag
| ||||| ||||| || || |||||| | |||||||| ||  | ||||| |||||  | ||||| || || |||||||||||||||||||| |||||||||| || |||     |   |  ||   | |    | ||||  |||  || |  ||  || |  | || | |                               
TGCTTCGATTTCTGGATAAGCTTTGTGTTGATTCACAGATATTGGTTGACATATTTATCAACTATGACTGTGATGTCAATTCATCAAATATATTTGAGAGgtgtgctattattttatttaattttttatagttatttta--tttgatttactgtataaataatatgtgcag------------------------------

upper sequence: AT3G60860.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA03G02610.1 (Glycine max), 5'ss of exon 2
TTCTTCGGTTTCTTGACAAACTTTGTTTGGATTCACAAATCCTAGTTGATATATTCTTGAACTACGATTGCGATGTCAATTCATCAAATATCTTTGAGAGgtatgttatgtcccttgatgcttcgctgtttaaagtttaagtttcgttcaggtggaagttctttgcgtaattt-atgtttcctctgtatga-tcatgtttag
| ||||| ||||| || || |||||| | |||||||| ||  | ||||| |||||  | ||||| || || |||||||||||||||||||| |||||||||| || ||| |   ||  |   | | |  |  |  ||| | ||   ||   ||  || |  | || | ||||| ||||||    | |     ||| ||||| 
TGCTTCGATTTCTGGATAAGCTTTGTGTTGATTCACAGATATTGGTTGACATATTTATCAACTATGACTGTGATGTCAATTCATCAAATATATTTGAGAGgtgtgctat-tattttatttaattgtttatagatattttatttgatttactgtataaataatatgtgcaatttcatgtttagaatatggatctcaagttta-

upper sequence: AT3G60860.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA18G45340.1 (Glycine max), 5'ss of exon 2
TTCTTCGGTTTCTTGACAAACTTTGTTTGGATTCACAAATCCTAGTTGATATATTCTTGAACTACGATTGCGATGTCAATTCATCAAATATCTTTGAGAGgtatg---ttatgtcccttgatgcttcgctgtttaaagtttaagtttcgttcaggtggaagttctttgcgtaattt-atgtttcctctgtatga-tcatgtttag
| ||||| ||||| || || |||||| | |||||||| ||  | ||||| |||||  | ||||| || || |||||||||||||||||||| |||||||||| ||   |||| |   || ||  ||    |||    |||| | ||   ||   ||  || |  | || | | ||| ||||||    | |     | | ||||| 
TGCTTCGATTTCTGGATAAGCTTTGTGTTGATTCACAGATATTGGTTGACATATTTATCAACTATGACTGTGATGTCAATTCATCAAATATATTTGAGAGgtgtgctattattttatttaattttttatagtt----gttttatttgatttactgtataaataatatgtgcagtttcatgtttagaatatggatcttaagttta-

upper sequence: AT3G60860.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv15s0048g00800.t01 (Vitis vinifera), 5'ss of exon 2
TTCTTCGGTTTCTTGACAAACTTTGTTTGGATTCACAAATCCTAGTTGATATATTCTTGAACTACGATTGCGATGTCAATTCATCAAATATCTTTGAGAGgtatgttatgtcccttgatgcttcgctgtttaaagtttaagtttcgttcaggtggaagttctttgcgtaatttatgtttcctctgtatgatcatgtttag------
| ||||||||||| || ||||| ||| | |||||||| ||  |||| || |||||| | || || ||||| ||||||||||||||||| || || |||||||||||  |||   ||| |  ||   |||| | |    ||  |||  | |     |||  |||   ||  |  |   || |  |   ||   | | |         
TGCTTCGGTTTCTAGAGAAACTCTGTGTTGATTCACAGATTTTAGTAGACATATTCATCAATTATGATTGTGATGTCAATTCATCAAACATATTCGAGAGgtatgtcctgt---ttggt-tttttttgttgata--caaatattcaattatacaaaagcacttctggttgtaaaaaatttcagttggtggcaaagctctttgttac