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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCATCATCTGGATTATCTTGGAGTGCAAGTGGCTTGGGTTACAGGGCCATGGTTTCTTTCCATCTTCATGAATATGCTTCCATGGGAAAGTGgtcaggttttaaacattggaattaaagctgtcttgtttgaaatagaattgagtaactagtaaattatgctggcaatctgttaaaatttgatcatctttctctttgagatttgggactgagaacccattttctttctaaatgttcgtcttcttgatcacag

Basic information

species Arabidopsis thaliana
transcript AT3G55020.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G55020.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: LOC_Os01g61860.1 (Oryza sativa), 5'ss of exon 9
TTCATCATCTGGATTATCTTGGAGTGCAAGTGGCTTGGGTTACAGGGCCATGGTTTCTTTCCATCTTCATGAATATGCTTCCATGGGAAAGTGgtcaggttttaaacattggaattaaagctgtcttgtttgaaatag-aattgagtaactagtaaattatgctggcaatctgttaaaatttgatcatctttctctttgagatttgggactgagaacccattttctttctaaatgttcgtcttcttgatcacag
|  |||| |||||||| || || || ||||| || |||||||| || ||||||||||| || || |||||||| ||||| ||||||||||||||| ||  ||     |||           |   || ||||||| || ||||  | ||    |   ||||| | | | || ||  |||        | |||    ||| | | |    |                                            
TAAATCACCTGGATTACCTCGGCGTTCAAGTTGCATGGGTTACTGGACCATGGTTTCTATCTATATTCATGAACATGCTACCATGGGAAAGTGgtaagtctt-----att----------tttctttatttgaaagagtaatttcggaaaggtt---ttatggtcgaagtc-gtagaaaaccatgggtattttggcttgtggtatacatccc------------------------------------------

upper sequence: AT3G55020.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GRMZM2G051050_T01 (Zea mays), 5'ss of exon 9
TTCATCATCTGGATTATCTTGGAGTGCAAGTGGCTTGGGTTACAGGGCCATGGTTTCTTTCCATCTTCATGAATATGCTTCCATGGGAAAGTGgtcaggttttaaacattggaattaaagctgtcttgtttgaaatagaattgagtaactagtaaattatgctggcaatctgttaaaatttgatcatctttctctttgagatttgggactgagaacccattttctttctaaatgttcgtcttcttgatcacag
   |||| |||||||| |||||| | ||||| || |||||||| |||||||||||  | |||||||||| |||| ||||||| |||||||||||| ||  ||||    ||   ||||   |  |        |  |  |   ||  |     || |  ||   |   | ||  |   ||  | | | ||    |                                                           
CAAATCACCTGGATTACCTTGGACTTCAAGTTGCATGGGTTACTGGGCCATGGTTCTTATCCATCTTCACGAATGTGCTTCCTTGGGAAAGTGgttagactttatttttttacattatttccattaccgagtacttgtagcagaacattctctataa-atatagtttagctaatgcgatggggttacctgcacc-----------------------------------------------------------

upper sequence: AT3G55020.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GRMZM2G094951_T01 (Zea mays), 5'ss of exon 9
TTCATCATCTGGATTATCTTGGAGTGCAAGTGGCTTGGGTTACAGGGCCATGGTTTCTTTCCATCTTCATGAATATGCTTCCATGGGAAAGTGgtcagg-----ttttaaac-attggaattaaagctgtcttg--tttgaaatagaattgagtaactagtaaattatgctggcaatctgttaaaatttgatcatctttctctttgagatttgggactgagaacccattttctttctaaatgttcgtcttcttgatcacag
   |||| |||||||| |||||| | ||||| || |||||||| |||||||||||  | ||||||||||  ||| ||||||| |||||||||||| ||      ||||| |  |||   ||||    | ||| |     | |  |||| || |   | | || |||| |  || ||   ||   || | ||  |                                                                   
CAAATCACCTGGATTACCTTGGACTTCAAGTTGCATGGGTTACTGGGCCATGGTTCTTATCCATCTTCACAAATGTGCTTCCCTGGGAAAGTGgttagacttccttttacattatttccattacctttttctcgaacacgcaggagaactgcgcgtc-attatattaaga-ggaaaaaggtcccaagtggactaa------------------------------------------------------------------

upper sequence: AT3G55020.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GRMZM2G096470_T01 (Zea mays), 5'ss of exon 9
TTCATCATCTGGATTATCTTGGAGTGCAAGTGGCTTGGGTTACAGGGCCATGGTTTCTTTCCATCTTCATGAATATGCTTCCATGGGAAAGTGgtcaggttttaaacattggaattaaagctgtcttgtttgaaatagaattgagtaactagtaaattatgctggcaatctgttaaaatttgatcatctttctctttgagatttgggactgagaacccattttctttctaaatgttcgtcttcttgatcacag
|  ||||||| ||||| ||||| || ||||| || ||||| || || |||||||| || || || || ||||| |||||||| |||||||||||| ||  ||     |||          |||| || ||||||| |    |    |  |      ||    ||    |         | || |   |||  | | ||  |||||  ||     |   |  ||                              
TAAATCATCTTGATTACCTTGGTGTACAAGTTGCATGGGTCACTGGTCCATGGTTCCTATCTATTTTTATGAACATGCTTCCCTGGGAAAGTGgtgagcctt-----att----------ctgtattatttgaaaca----tctacattttcctttttgaaatgatgtttc-------tctgcttgccttattttgtgttatttgaaac-----atttaccttt-----------------------------

upper sequence: AT3G55020.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA20G38810.1 (Glycine max), 5'ss of exon 9
TTCATCATCTGGATTATCTTGGAGTGCAAGTGGCTTGGGTTACAGGGCCATGGTTTCTTTCCATCTTCATGAATATGCTTCCATGGGAAAGTGgtcaggttttaaacattggaattaaagctgtcttgtttgaaatagaattgagtaactagtaaattatgctggcaatctgttaaaatttgatcatctttctctttgagatttgggactgagaacccattttctttctaaatgttcgtcttcttgatcacag
   |||||||||||||||| |||||||| ||||| |||||||| || |||||||| || ||||| ||  |||| |||||||| |||||||||||||||||||||     |     |  ||  |  | | ||   || |  |     |  |   ||  |    ||   || |||  |   ||| ||    |||  | |||  | | | | |        ||||    |  |                       
CCAATCATCTGGATTATCTGGGAGTGCAGGTGGCATGGGTTACTGGACCATGGTTCCTGTCCATTTTTGTGAACATGCTTCCTTGGGAAAGTGgtcaggttttatgttctatctattgagtagcgtagcttagtattgcttcacaaagttgccaatgtcaaatgagcatttgtacactattgttcgagcttccttctgatctattgtaat-------tatttggacttcag----------------------

upper sequence: AT3G55020.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA10G44110.1 (Glycine max), 5'ss of exon 9
TTCATCATCTGGATTATCTTGGAGTGCAAGTGGCTTGGGTTACAGGGCCATGGTTTCTTTCCATCTTCATGAATATGCTTCCATGGGAAAGTGgtcaggttttaaacattggaattaaagctgtcttgtttgaaatagaattgagtaactagtaaattatgctggcaatctgt----taaaatttgatcatctttctctttgagatttgggactgagaacccattttctttctaaatgttcgtcttcttgatcacag
   ||||||| |||||||| |||||||| ||||| |||||||| || |||||||| || ||||| ||  |||| |||||||| |||||||||||||||||||||     |     |  ||  || | |  |    |    |     |  |   ||  |    ||   || |||    ||   ||||| | || ||||  |  |   |    | |  ||   ||                                  
CCAATCATCTAGATTATCTGGGAGTGCAGGTGGCATGGGTTACTGGACCATGGTTCCTGTCCATTTTTGTGAACATGCTTCCTTGGGAAAGTGgtcaggttttatgttctatctatttagtagtgtagcctagtcttacttcacaaagttgccaatgtgaaatgagcatttgtacgctattgtttgagcttccttctgatccattgtaattatttggacttcag---------------------------------

upper sequence: AT3G55020.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv13s0067g03420.t01 (Vitis vinifera), 5'ss of exon 9
TTCATCATCTGGATTATCTTGGAGTGCAAGTGGCTTGGGTTACAGGGCCATGGTTTCTTTCCATCTTCATGAATATGCTTCCATGGGAAAGTGgtcaggttttaaacattggaattaaagctgtcttgtttgaaatagaattga-gtaactagtaaattatgctggcaatctgttaaaatttgatcatctttctc-tttgagatttgggactgagaacccattttctttctaaatgttcgtcttcttgatcacag---------------------------
|| |||| ||||||| ||| |||||||| ||||| |||||||| || || |||||||||||||| || |||||||||||||||||||||||||||||| | |  | ||| |    || ||   |    | | |  | |     |  |  |   |||| | |  |   | |   || |  | ||  |||||  ||  | | ||  ||   | ||  |    |||   ||  |||    | |  | |  | | |  |                           
TTAATCACCTGGATTTTCTGGGAGTGCAGGTGGCATGGGTTACTGGACCGTGGTTTCTTTCCATTTTTATGAATATGCTTCCATGGGAAAGTGgtcag-tctccatcatggcttatatagaaattagatgttatttggggcctacattgcatttaaaatctatttatatttctttgatttatggccatctcactaatcttagcattctcattgtca--tgattgcattcataatgtcttggttacaagcttatgggttttgatggctttctcctgacttcag