Sequence
atgc intronic sequence ATGC exonic sequenceTTCTTAGAGTCTGGGATGTGCTTCTCTTTGAAGGAACTCGTGTTATGCTTTTCAGAACAGCACTCGCATTGATGGAACTATATGgtacttgattgaaactgctggtctttcaatttaagtgagatggtttgtggaccttctgaacgcagtggcgtcatcatcgagactgctctaacttatggtttaattcacttcag
Basic information
species | Arabidopsis thaliana |
transcript | AT3G55020.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G55020.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA20G38810.1 (Glycine max), 5'ss of exon 10
TTCTTAGAGTCTGGGATGTGCTTCTCTTTGAAGGAACTCGTGTTATGCTTTTCAGAACAGCACTCGCATTGATGGAACTATATGgtacttgattgaaactgctggtctttcaatttaagtgagatggtttgtggaccttctgaacgcagtggcgtcatcatcgagactgctctaacttatggtttaattcacttcag
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TTCTTCGAGTGTGGGATGTGCTTCTTTTTGAAGGAAACCGAGTCATGCTCTTTAGAACTGCAGTTGCTTTAATGGAGCTATATGgtact-ggctgaaaatgtttaatggaaaaagtaaactag-caatgcttaagccatgcatatgc--tcacagaac--ttaatttcatcatgtcttgtag---------------
upper sequence: AT3G55020.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA10G44110.1 (Glycine max), 5'ss of exon 10
TTCTTAGAGTCTGGGATGTGCTTCTCTTTGAAGGAACTCGTGTTATGCTTTTCAGAACAGCACTCGCATTGATGGAACTATATGgtacttgattgaaactgctggtctttcaatttaagtgagatggtttgtggaccttctgaacgca-gtggcgtcatcatcgagactgctc-taacttatggtttaattcacttcag
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TTCTTCGAGTGTGGGATGTGCTTCTTTTTGAAGGAAACCGAGTCATGCTCTTTAGAACTGCAGTTGCTTTAATGGAGCTATATGgtact-ggctgaaaatgtttat---------tggaaaaggtaatctagcaatacttatgccatacatatcctcacaacttaatttcatcatgtcttgtag---------------
upper sequence: AT3G55020.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv13s0067g03420.t01 (Vitis vinifera), 5'ss of exon 10
TTCTTAGAGTCTGGGATGTGCTTCTCTTTGAAGGAACTCGTGTTATGCTTTTCAGAACAGCACTCGCATTGATGGAACTATATGgtacttgattgaaactgctggtctttcaatttaagtgagatggtttgtggaccttctgaacgcagtggcgtcatcatcgagactgctctaacttatggtttaattcacttcag----------
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TTCTCCGGGTCTGGGATGTGCTTCTTTTTGAAGGAAACCGTGTCATGCTATTTAAAACAGCACTTGCTTTGATGGAGTTATATGgtactgggtaaaa-------gacatttaattaccgtgatattcttca-ggataatc--aacatggatttaatactatgtagggtatctttttacagaatgtaattttgttcagtctcttgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|163992751|gb|ES045378.1|ES045378EST: AACTCGTGTTATGCTTTTCAGAACAGCACTCGCATTGATGGAACTATATG GTCCTGCATTAGTTACTACGAAGGA
genomic: AACTCGTGTTATGCTTTTCAGAACAGCACTCGCATTGATGGAACTATATGgtacttgatt ... ttcacttcagGTCCTGCATTAGTTACTACGAAGGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTCTTAGAGTCTGGGATGTGCTTCTCTTTGAAGGAACTCGTGTTATGCTTTTCAGAACAGCACTCGCATTGATGGAACTATATGgtacttgattgaaactgctggtctttcaatttaagtgagatggtttgtggaccttctgaacgcagtggcgtcatcatcgagactgctctaacttatggtttaattcacttcag
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