Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTCCTGGTCATCCTGCTCTAGATGATGATGGTAGAAATGCTCTACGGCGTTTGCTTACTGCTTATGCTAGGCATAATCCTTCTGTAGGATACTGTCAGgtatttgttcttaaccaatatcatgatctttattgtagtacctctattttagtaccgagacatagtaaattaacattaatatcaagttaatatcttttgtcaatatactttctgcag

Basic information

species Arabidopsis thaliana
transcript AT3G55020.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G55020.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os01g61860.2 (Oryza sativa), 5'ss of exon 4
ATTTCCTGGTCATCCTGCTCTAGATGATGATGGTAGAAATGCTCTACGGCGTTTGCTTACTGCTTATGCTAGGCATAATCCTTCTGTAGGATACTGTCAGgtat--ttgttcttaaccaatatcatgatctttattgtagtacctctattttagtaccgagacatagtaaattaacattaatatcaagttaatatcttttgtcaatatactttctgcag
 || || |||||||| || |||||||| ||||| ||||||||| || | || ||||| || |||||||| || ||||| || || || || |||||||||||||   | | | | ||   |  | | || |   || |  |  | ||   ||  |   |   | | |  ||         ||  ||||   | |||| |||                  
GTTCCCAGGTCATCCCGCACTAGATGAGGATGGCAGAAATGCTTTAAGACGCTTGCTCACAGCTTATGCGAGACATAACCCATCAGTTGGTTACTGTCAGgtatggctttcccttacttctgac-tcatgtcacttttcttgtcactggattgatgtagcttctttgggaaaccttgcatattgcaagacca-atctgttgc-----------------

upper sequence: AT3G55020.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G094951_T01 (Zea mays), 5'ss of exon 5
ATTTCCTGGTCATCCTGCTCTAGATGATGATGGTAGAAATGCTCTACGGCGTTTGCTTACTGCTTATGCTAGGCATAATCCTTCTGTAGGATACTGTCAGgtatttgttcttaaccaatatcatgatctttattgtagtacctctattttagtaccgagacatagtaaattaacattaatatcaagttaatatcttttgtcaatatactttctgcag
 |||||||||||||||||| ||||||| ||||| ||||||||| |  | || |||||||  |||||||| |  || ||||| || || || ||||| ||||||  | | |    |  | ||  | ||  | ||| | || | | ||| |||  |       ||  |  ||| | ||    |  |||  ||            |||||  ||      
TTTTCCTGGTCATCCTGCTTTAGATGAGGATGGAAGAAATGCTTTGAGACGCTTGCTTATAGCTTATGCGAAACACAATCCATCAGTTGGTTACTGCCAGgtaaatctacccgtcacacat--ttattctcattat-gtccttttatcttaacaaaagccaattatttatttagatctccaaaaaggcaa--------actgatatatatt------

upper sequence: AT3G55020.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G051050_T01 (Zea mays), 5'ss of exon 5
ATTTCCTGGTCATCCTGCTCTAGATGATGATGGTAGAAATGCTCTACGGCGTTTGCTTACTGCTTATGCTAGGCATAATCCTTCTGTAGGATACTGTCAGgtatttgttcttaaccaatatcatgatctttattgtagtacctctattttagtaccgagacatagtaaattaacattaatatcaagttaatatcttttgtcaatatactttctgcag
 |||||||||||||||||| ||||||| ||||| ||||||||| |  | || |||||||  |||||||| |  || || || || || || ||||| ||||||  | | |  |   || |   ||||| | ||| |  |   | ||| |||  |  | |   |  | |  ||  ||  ||||  ||||| | |  || || | | ||          
TTTTCCTGGTCATCCTGCTTTAGATGAGGATGGAAGAAATGCTTTGAGACGCTTGCTTATAGCTTATGCGAAACACAACCCATCAGTTGGTTACTGCCAGgtaaatataccca--taacacattgatcctcattatt-tctttttatcttaccagagtggattgcttatatattatatatat--agttagt-tagttagttagt-ta----------

upper sequence: AT3G55020.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA20G38810.1 (Glycine max), 5'ss of exon 5
ATTTCCTGGTCATCCTGCTCTAGATGATGATGGTAGAAATGCTCTACGGCGTTTGCTTACTGCTTATGCTAGGCATAATCCTTCTGTAGGATACTGTCAGgtatttgttcttaaccaatatcatgatctttattgtagtacctctattttagtaccgagacatagtaaattaacattaatatcaagttaatatcttttgtcaatatactttctgcag
||||||||||||||||||||| || || ||||||||||||||| |  | || || |||||||| |||||| | ||||| || || || || ||||| |||||  ||| |  |    |   | |     | |||| |    | | | ||||| ||   |  |    |   ||  ||||| | |  ||| ||| |   |      |             
ATTTCCTGGTCATCCTGCTCTGGACGAGGATGGTAGAAATGCTTTGAGACGATTACTTACTGCATATGCTCGACATAACCCCTCAGTTGGTTACTGCCAGgtccttgcttctttaaagagttacatgttctatttttcc-cattttttttattataaaagctgttt---tttccattatttttcagtcaatctaaatgaggtgt-------------

upper sequence: AT3G55020.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA10G44110.1 (Glycine max), 5'ss of exon 5
ATTTCCTGGTCATCCTGCTCTAGATGATGATGGTAGAAATGCTCTACGGCGTTTGCTTACTGCTTATGCTAGGCATAATCCTTCTGTAGGATACTGTCAGgtatttgttc--ttaaccaatatcatgatctttattgtagtacctctattttagtaccgagacatagtaaattaacattaatatcaagttaatatcttttgtcaatatactttctgcag
||||||||||||||||||| | || || ||||||||||||||| |  | || || |||||||| |||||| | ||||| || || || || ||||| |||||  ||| |   ||||  | |  |||| ||| | || |   | || | |||||  |  |     |  |  ||||   || |  ||||  ||||    | | |                 
ATTTCCTGGTCATCCTGCTTTGGACGAGGATGGTAGAAATGCTTTGAGACGATTACTTACTGCATATGCTCGACATAACCCCTCAGTTGGTTACTGCCAGgtccttgcttctttaaagagttacatgttctatttt-tcccaacttttttttataaaagctgttttttccattatttttca-gtcaatctaatgaggtgttt-----------------

upper sequence: AT3G55020.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv13s0067g03420.t01 (Vitis vinifera), 5'ss of exon 5
ATTTCCTGGTCATCCTGCTCTAGATGATGATGGTAGAAATGCTCTACGGCGTTTGCTTACTGCTTATGCTAGGCATAATCCTTCTGTAGGATACTGTCAGgtatttgttcttaaccaatatcatgatctttattgtagtacctctattttagtaccgagacatagtaaattaacattaatatcaagttaatatcttttgtcaatatactttctgcag
||| || |||||||||||||||||||| ||||||||||||||| |  ||||||| ||||| || |||||| | || || || |||||||| |||||||||||| |||   |  |   |  | |||   || |||||          |||||     |  | ||||   | | || ||  |   || ||  | || |   | |||  |  |  |    
ATTCCCAGGTCATCCTGCTCTAGATGAGGATGGTAGAAATGCTTTGAGGCGTTTACTTACGGCATATGCTCGACACAACCCCTCTGTAGGGTACTGTCAGgtaattggattggaaggagtttatgtggttaattgt----------ttttatggttggaaaatag---agttactttcttgcaaaatttgtgtcatgcat-aattgatatagta---

upper sequence: AT3G55020.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: EFJ22778 (Selaginella moellendorffii), 5'ss of exon 4
ATTTCCTGGTCATCCTGCTCTAGATGATGATGGTAGAAATGCTCTACGGCGTTTGCTTACTGCTTATGCTAGGCATAATCCTTCTGTAGGATACTGTCAGgtatttgttcttaaccaatatcatgatctttattgtagtacctctattttagtaccgagacatagtaaattaacattaatatcaagttaatatcttttgtcaatatactttctgcag
 |||||||||||||| ||||||||||| |||||| | || ||  | ||  |  |  | ||||| || ||  | |||||||||  ||| ||||||||||||||  | |||    |  | || | | |  | |    ||  |  ||   || | |||    |                                                         
TTTTCCTGGTCATCCAGCTCTAGATGAAGATGGTCGGAACGCATTGCGCAGGCTTTTGACTGCATACGCACGACATAATCCTGATGTTGGATACTGTCAGgt--tggttgaagattagtagccttaagtgt----taaaagatcgtcttgaatacttgcag--------------------------------------------------------

upper sequence: AT3G55020.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: EFJ30863 (Selaginella moellendorffii), 5'ss of exon 4
ATTTCCTGGTCATCCTGCTCTAGATGATGATGGTAGAAATGCTCTACGGCGTTTGCTTACTGCTTATGCTAGGCATAATCCTTCTGTAGGATACTGTCAGgtatttgttcttaaccaatatcatgatctttattgt-agtacctctattttagtaccgagacatagtaaattaacattaatatcaagttaatatcttttgtcaatatactttctgcag
 |||||||||||||| ||||||||||| |||||| | || ||  | ||  |  |  | ||||| || ||  | |||||||||   || ||||||||||||||  | |||    |  | ||      |||| | ||| |  |  ||   || | |||    |                                                         
TTTTCCTGGTCATCCAGCTCTAGATGAAGATGGTCGGAACGCATTGCGCAGGCTTTTGACTGCATACGCACGACATAATCCTGACGTTGGATACTGTCAGgt--tggttgaagattagta-----gtcttaagtgttaaaagatcgtcttgaatacttgcag--------------------------------------------------------