1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CCAGACAAACTAGTATTTCATCACGAGATGATTCTGATGACGATGATCTTGATGGAGACGCAGATAATGGAGATCCTACTGATGTGAAGCGTGCTAGGAGgtacaaatcttgatttttgtaccttagaatgtttctggtaatcgttctgaatctcgaggctgatagatatagacatgcttttgggaaaaggcttgtacct...
species | Arabidopsis thaliana |
transcript | AT3G54620.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GATGGAGACGCAGATAATGGAGATCCTACTGATGTGAAGCGTGCTAGGAG GATGCTCTCAAACCGAGAATCCGCTAGGCGCTCTAGGAGAAGAAAGCAAGAEST: gi|164094234|gb|EL983721.1|EL983721
genomic: GATGGAGACGCAGATAATGGAGATCCTACTGATGTGAAGCGTGCTAGGAGgtacaaatct ... aattacccagGATGCTCTCAAACCGAGAATCCGCTAGGCGCTCTAGGAGAAGAAAGCAAGA
EST: GATGGAGACGCAGATAATGGAGATCCTACTGATGTGAAGCGTGCTAGGAG GATGCTCTCAAACCGAGAATCCGCTAGGCGCTC
genomic: GATGGAGACGCAGATAATGGAGATCCTACTGATGTGAAGCGTGCTAGGAGgtacaaatct ... aattacccagGATGCTCTCAAACCGAGAATCCGCTAGGCGCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCAGACAAACTAGTATTTCATCACGAGATGATTCTGATGACGATGATCTTGATGGAGACGCAGATAATGGAGATCCTACTGATGTGAAGCGTGCTAGGAGgtacaaatcttgatttttgtaccttagaatgtttctggtaatcgttctgaatctcgaggctgatagatatagacatgcttttgggaaaaggcttgtacct
- - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaaagg