1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtacgtctcttagatccatttcttatgtgtattcagattaaaggaattgatgatttcaacaataaggaatgtttggttgtgtgttgatttgatatgattttcttcagGTGGGAACTGTGAAACCGGAAGATTCGAGTGCTTCAGCTAGCAATCAAAAACAAGCTCAAG
species | Arabidopsis thaliana |
transcript | AT3G54620.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGATTCTTAAGAGCAAGCTCGAGCTTGCTTGCGCTGCTGTTGCTCGTCGT GTGGGAACTGTGAAACCGGAAGATTCGAGTGCTTCAGCTAGCAATCAAAAAEST: gi|86058666|gb|DR354423.1|DR354423
genomic: CGATTCTTAAGAGCAAGCTCGAGCTTGCTTGCGCTGCTGTTGCTCGTCGTgtacgtctct ... ttttcttcagGTGGGAACTGTGAAACCGGAAGATTCGAGTGCTTCAGCTAGCAATCAAAAA
EST: CGATTCTTAAGAGCAAGCTCGAGCTTGCTTGCGCTGCTGTTGCTCGTCGT GTGGGAACTGTGAAACCGGAAGATTCGAGTGCTTCAGCTAGCAATCAAAAAEST: gi|124934606|gb|EL011663.1|EL011663
genomic: CGATTCTTAAGAGCAAGCTCGAGCTTGCTTGCGCTGCTGTTGCTCGTCGTgtacgtctct ... ttttcttcagGTGGGAACTGTGAAACCGGAAGATTCGAGTGCTTCAGCTAGCAATCAAAAA
EST: CTTGCGCTGCTGTTGCTCGTCGT GTGGGAACTGTGAAACCGGAAGATTCGAGTGCTTCAGCTAGEST: gi|164067120|gb|ES144091.1|ES144091
genomic: CTTGCGCTGCTGTTGCTCGTCGTgtacgtctct ... ttttcttcagGTGGGAACTGTGAAACCGGAAGATTCGAGTGCTTCAGCTAG
EST: GCTTGCGCTGCTGTTGCTCGTCGT GTGGGAACTGTGAAACCGGAAGATTCGAGTGCTTCAGCTAGCAATCAAAAAEST: gi|86058665|gb|DR354422.1|DR354422
genomic: GCTTGCGCTGCTGTTGCTCGTCGTgtacgtctct ... ttttcttcagGTGGGAACTGTGAAACCGGAAGATTCGAGTGCTTCAGCTAGCAATCAAAAA
EST: CGATTCTTAAGAGCAAGCTCGAGCTTGCTTGCGCTGCTGTTGCTCGTCGT GTGGGAACTGTGAAACCGGAAGATTCGAGTGCTTCAGCTAGCAATCAAAAAEST: gi|86058659|gb|DR354416.1|DR354416
genomic: CGATTCTTAAGAGCAAGCTCGAGCTTGCTTGCGCTGCTGTTGCTCGTCGTgtacgtctct ... ttttcttcagGTGGGAACTGTGAAACCGGAAGATTCGAGTGCTTCAGCTAGCAATCAAAAA
EST: CGATTCTTAAGAGCAAGCTCGAGCTTGCTTGCGCTGCTGTTGCTCGTCGT GTGGGAACTGTGAAACCGGAAGATTCGAGTGCTTCAGCTAGCAATCNNNNN
genomic: CGATTCTTAAGAGCAAGCTCGAGCTTGCTTGCGCTGCTGTTGCTCGTCGTgtacgtctct ... ttttcttcagGTGGGAACTGTGAAACCGGAAGATTCGAGTGCTTCAGCTAGCAATCAAAAA
atttcaacaataaggaatgtttggttgtgtgttgatttgatatgattttcttcagGTGGGAACTGTGAAACCGGAAGATTCGAGTGCTTCAGCTAGCAATCAAAAACAAGCTCAAG
ttttcttc CT-rich tract
atttgatatgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtctcttagatccatttcttatgtgtattcagattaaaggaattgatgatttcaacaataaggaatgtttggttgtgtgttgatttgatatgattttcttcagGTGGGAACTGTGAAACCGGAAGATTCGAGTGCTTCAGCTAGCAATCAAAAACAAGCTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA