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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtcttatgctgttcaatcatttgcgtatgagttatttaatttgaacaaatttaggaaatatgaattgaagtataatgatacctgtcttttctcttaattttttcttccagATTATATCGGATGGGCAATTACAAGAACTTCTTAAGTAGAACAGCTTCTGAGGCGACATACTTGCAGTATTGCATAAGTGAACATCATATTAGAGAG

Basic information

species Arabidopsis thaliana
transcript AT3G54380.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125164781|gb|EL191369.1|EL191369
EST:     TTGTCTTTGGTAAAATCCAAGGAAATATGTTTTGTACGAAACCTTTTAAG                         ATTATATCGGATGGGCAATTACAAGAACTTCTTAAGTAGAACAGCTT
genomic: TTG-CTTTGGTAAAATCCAAGGAAATATGTTTTGTACGAAACCTTTTAAGgtagtcttat ... tttcttccagATTATATCGGATGGGCAATTACAAGAACTTCTTAAGTAGAACAGCTT
EST: gi|86080535|gb|DR376292.1|DR376292
EST:     TTTGCTTTGGTAAAATCCAAGGAAATATGTTTTGTACGAAACCTTTTAAG                         ATTATATCGGATGGGCAATTACAAGAACTTCTTAAGTAGAACAGCTTCTGA
genomic: TTTGCTTTGGTAAAATCCAAGGAAATATGTTTTGTACGAAACCTTTTAAGgtagtcttat ... tttcttccagATTATATCGGATGGGCAATTACAAGAACTTCTTAAGTAGAACAGCTTCTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatatgaattgaagtataatgatacctgtcttttctcttaattttttcttccagATTATATCGGATGGGCAATTACAAGAACTTCTTAAGTAGAACAGCTTCTGAGGCGACATACTTGCAGTATTGCATAAGTGAACATCATATTAGAGAG
                                    tcttaat  putative branch site (score: 3)
                       tacctgtcttttctct  CT-rich tract
                               ttttctcttaattttt  TA-rich tract