Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTCATGATTTTATTTTCGATAGGACAAGGTCTATTAGACAAGATCTTAGCATCCAGAATTTGGCCAATGAGAGAGTGATCTACCTTTATGAGGAAATGgtatggtttgacttttttctaactcttttctctttcctggttcggtaaatgaattacactgagcatgtctattttgtctttagaattgctttccttgggt...

Basic information

species Arabidopsis thaliana
transcript AT3G54380.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G54380.3 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os03g22870.2 (Oryza sativa), 5'ss of exon 2
GGTTCATGATTTTATTTTCGATAGGACAAGGTCTATTAGACAAGATCTTAGCATCCAGAATTTGGCCAATGAGAGAGTGATCTACCTTTATGAGGAAATGgtatggtttgacttttttctaactcttttctctttcctggttcggtaaatgaattacactgagcatgtctattttgtctttagaattgctttccttgggt--------
 |||||||||||||| || ||||||||||||||| | || ||||| || || || |||||  | |  ||||    ||  ||  |  | || |||||  |||||   |   |   |  || |  | ||||    ||  ||  | |     ||||||  |  |  | | | | | | || |     |||| | |   |||          
AGTTCATGATTTTATATTTGATAGGACAAGGTCTGTGAGGCAAGACCTCAGTATTCAGAACATAGTGAATGCCCAAGCAATTCAAATATACGAGGATGTGgtacactcata---tcatcca--tgtttttatcttattgtatagacctctgaattttagggtacttatttgtctggttt---agattgttgtgtctggaatctaactt

upper sequence: AT3G54380.3 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv13s0067g01060.t01 (Vitis vinifera), 5'ss of exon 2
GGTTCATGATTTTATTTTCGATAGGACAAGGTCTATTAGACAAGATCTTAGCATCCAGAATTTGGCCAATGAGAGAGTGATCTACCTTTATGAGGAAATGgtatggttt------gacttttttctaactcttttctctttcctg-gttcggtaaatgaat-tacactgagcatgtctattttgtctttagaattgctttccttgggt
||||||||||||  | || ||||||||||| || || ||||||||||||||||| |||||| |    |||||   |   ||  |  | | ||| |||||||||||  ||       || |  |   || |   || | ||    |  |||      | ||  |||| | ||  |  | |     |   || |    || ||||     
GGTTCATGATTTCGTCTTTGATAGGACAAGATCAATAAGACAAGATCTTAGCATGCAGAATATCATTAATGATCAAACAATTCATATGTTTGAAGAAATGgtatgaatttcttgaaacataatctcaattacctttttttctgagcattcatctcctcaacatacaataagt-tagccaacccattgctaaa--cactctcct-----

upper sequence: AT3G54380.3 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv13s0067g02370.t01 (Vitis vinifera), 5'ss of exon 3
GGTTCATGATTTTATTTTCGATAGGACAAGGTCTATTAGACAAGATCTTAGCATCCAGAATTTGGCCAATGAGAGAGTGATCTACCTTTATGAGGAAATGgtatggttt------gacttttttctaactcttttctctttcctg-gttcggtaaatgaat-tacactgagcatgtctattttgtctttagaattgctttccttgggt
||||||||||||    || ||||||||||| || || ||||||||||||||||| |||||| | |  |||||   |   ||  |  | | ||| |||||||||||  ||       ||    |   || |   || | ||    |  |||      | ||  |||| | ||  |  | |     |   || |    || ||||     
GGTTCATGATTTCGGATTTGATAGGACAAGATCAATAAGACAAGATCTTAGCATGCAGAATATCGTTAATGATCAAACAATTCATATGTTTGAAGAAATGgtatgaatttcttgaaacacaatctcaattacctttttttctgagcattcatctcctcaacatacaataagt-tagccaacccattgctaaa--cactctcct-----

upper sequence: AT3G54380.3 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv13s0067g01260.t01 (Vitis vinifera), 5'ss of exon 3
GGTTCATGATTTTATTTTCGATAGGACAAGGTCTATTAGACAAGATCTTAGCATCCAGAATTTGGCCAATGAGAGAGTGATCTACCTTTATGAGGAAATGgtatggtttgacttttttctaactcttttctctttcctggttcggtaaatgaattacactgagcatgtc-tattttgtctttagaattgctttccttgggt
||||||||||||  | || ||||||||||| || || ||||||||||||||||| |||||| | |  |||||   |   ||  |  | ||||| |||||||||||  ||   |      |||      |  | ||  |  ||| |   ||  ||  | || | |||    ||  ||  |      ||||||   |      
GGTTCATGATTTCGTCTTTGATAGGACAAGATCAATAAGACAAGATCTTAGCATGCAGAATATCGTTAATGATCAAACAATTCATATGTATGAAGAAATGgtatgaatttcttgaaacataatctcaattacctttttttttctgagcattcatctc-ctcaacatacaataagttagccaacccattgctaaacactctc

upper sequence: AT3G54380.3 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv13s0067g01430.t01 (Vitis vinifera), 5'ss of exon 3
GGTTCATGATTTTATTTTCGATAGGACAAGGTCTATTAGACAAGATCTTAGCATCCAGAATTTGGCCAATGAGAGAGTGATCTACCTTTATGAGGAAATGgtatggttt------gacttttttctaactcttttctctttcctgg--ttcggtaaatgaat-tacactgagcatgtctattttgtctttagaattgctttccttgggt
||||||||||||  | || ||||||||||| || || ||||||||||||||||| |||||| | |  |||||   |   ||  |  | ||||| |||||||||||  ||       || |  |   || |   || | ||||   |  |||      | ||  |||| | ||  |  | |     |   || |    ||  ||      
GGTTCATGATTTCGTCTTTGATAGGACAAGATCAATAAGACAAGATCTTAGCATGCAGAATATCGTTAATGATCAAACAATTCATATGTATGAAGAAATGgtatgaatttcttgaaacataatctcaattaccttttttttctgagcattcatctcctcaacatacaataagt-tagccaacccattgctaaa--cactcacc------

upper sequence: AT3G54380.3 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv13s0067g02620.t01 (Vitis vinifera), 5'ss of exon 3
GGTTCATGATTTTATTTTCGATAGGACAAGGTCTATTAGACAAGATCTTAGCATCCAGAATTTGGCCAATGAGAGAGTGATCTACCTTTATGAGGAAATGgtatggttt------gacttttttctaactcttttctctttcctgg--ttcggtaaatgaat-tacactgagcatgtctattttgtctttagaattgctttccttgggt
|||||||||||| || || ||||||||||| || || ||||||||||||||||| |||||| | |  |||||   |   ||  |  | ||||| |||||||||||  ||       || |  |   || |   || | ||||   |  |||      | ||  |||| | ||  |  | |     |   || |    ||  ||      
GGTTCATGATTTCATCTTTGATAGGACAAGATCAATAAGACAAGATCTTAGCATGCAGAATATCGTTAATGATCAAACAATTCATATGTATGAAGAAATGgtatgaatttcttgaaacataatctcaattaccttttttttctgagcattcatctcctcaacatacaataagt-tagccaacccattgctaaa--cactcacc------