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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agaattatcttttgctaggggtttaggtaaaaaattacacttgaagtaccaaaaagagtgtgtacagcttcatctaatatgttgtttttggtatcaatagAGAGGGAAAGAGTCACAAGAGAACGCCTGCGTGATCTTGCAGTGTTTGAGAGGCTTTATGGAAACCCCTCAAAATCATCCACAGAGATAGCTGTCAAAAA

Basic information

species Arabidopsis thaliana
transcript AT3G54380.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86044340|gb|DR340095.1|DR340095
EST:     TCCTGCTGACGTTTCATTGATTGTAGGAACTTGTTCTTCTATGTGCCCAG                         AGAGGGAAAGAGTCACAAGAGAACGCCTGCGTGATCTTGCAGTGTTTGAGA
genomic: TCCTGCTGACGTTTCATTGATTGTAGGAACTTGTTCTTCTATGTGCCCAGgtaatcatcg ... gtatcaatagAGAGGGAAAGAGTCACAAGAGAACGCCTGCGTGATCTTGCAGTGTTTGAGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaccaaaaagagtgtgtacagcttcatctaatatgttgtttttggtatcaatagAGAGGGAAAGAGTCACAAGAGAACGCCTGCGTGATCTTGCAGTGTTTGAGAGGCTTTATGGAAACCCCTCAAAATCATCCACAGAGATAGCTGTCAAAAA
                          atctaat  putative branch site (score: 3)
                             taatatgttgttttt  TA-rich tract