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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCGTCTCCTGAATCAGGGGATTGTAATCTCGAGTCTGACCAGCCCTTTTTGGAATATACATCAACCGTGACTGATGTGATTCAAgtgagtattttctgttctgcatttgattatagatatacattttcccctttcactcattctcattcttgatgcttcatttgtgtatcatattctag

Basic information

species Arabidopsis thaliana
transcript AT3G54060.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116384877|gb|EG427469.1|EG427469
EST:     CTGACCAGCCCTTTTTGGAATATACATCAACCGTGACTGATGTGATTCAA                         ATTTCAAGATGTATTGATCCTCTCTCTAACTCGAGCCATTCTTCTCTTAAC
genomic: CTGACCAGCCCTTTTTGGAATATACATCAACCGTGACTGATGTGATTCAAgtgagtattt ... catattctagATTTCAAGATGTATTGATCCTCTCTCTAACTCGAGCCATTCTTCTCTTAAC
EST: gi|116385105|gb|EG427697.1|EG427697
EST:     CTGACCAGCCCTTTTTGGAATATACATCAACCGTGACTGATGTGATTCAA                         ATTTCAAGATGTATTGATCCTCTCTCTAACTCGAGCCATTCTTTCTCT-AA
genomic: CTGACCAGCCCTTTTTGGAATATACATCAACCGTGACTGATGTGATTCAAgtgagtattt ... catattctagATTTCAAGATGTATTGATCCTCTCTCTAACTCGAGCCATTCTT-CTCTTAA
EST: gi|116385102|gb|EG427694.1|EG427694
EST:     CTGACCAGCCCTTTTTGGAATATACATCAACCGTGACTGATGTGATTCAA                         ATTTCAAGATGTATTGATCCTCTCTCTAACTCGAGCCATTCTT
genomic: CTGACCAGCCCTTTTTGGAATATACATCAACCGTGACTGATGTGATTCAAgtgagtattt ... catattctagATTTCAAGATGTATTGATCCTCTCTCTAACTCGAGCCATTCTT
EST: gi|116385103|gb|EG427695.1|EG427695
EST:     CTGCCCACCCCTTTTTGGAATATACATCACCCGTGACTGATGTGATTCAA                         ATTTCAAGATGTATTGATCCTCTCTCTAACTCGAGCCATTCTTCTCTTAAC
genomic: CTGACCAGCCCTTTTTGGAATATACATCAACCGTGACTGATGTGATTCAAgtgagtattt ... catattctagATTTCAAGATGTATTGATCCTCTCTCTAACTCGAGCCATTCTTCTCTTAAC