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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtactttagttttgtaggatcagtttttgtaaatagctattattacctcttgatgtctgatcatacgctatactaaatcacagGTCGTCTCCTGAATCAGGGGATTGTAATCTCGAGTCTGACCAGCCCTTTTTGGAATATACATCAACCGTGACTGATGTGATTCAA

Basic information

species Arabidopsis thaliana
transcript AT3G54060.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116412383|gb|EG454975.1|EG454975
EST:     AATCATTGCTTGTCACTGACCCCAAATCAACCCACTCAAACTGTTTCAGG                         GTCGTCTCCTGAATCAGGGGATTGTAATCTCGAGTCTGACCAGCCCTTTTT
genomic: AATCATTGCTTGTCACTGACCCCAAATCAACCCACTCAAACTGTTTCAGGgtatgtactt ... taaatcacagGTCGTCTCCTGAATCAGGGGATTGTAATCTCGAGTCTGACCAGCCCTTTTT
EST: gi|116384859|gb|EG427451.1|EG427451
EST:     AATCATTGCTTGTCACTGACCCCAAATCAACCCACTCAAACTGTTTCAGG                         GTCGTCTCCTGAATCAGGGGATTGTAATCTCGAGTCTGACCAGCCCTTTTT
genomic: AATCATTGCTTGTCACTGACCCCAAATCAACCCACTCAAACTGTTTCAGGgtatgtactt ... taaatcacagGTCGTCTCCTGAATCAGGGGATTGTAATCTCGAGTCTGACCAGCCCTTTTT
EST: gi|116412294|gb|EG454886.1|EG454886
EST:     AATCATTGCTTGTCACTGACCCCAAATCAACCCACTCAAACTGTTTCAGG                         GTCGTCTCCTGAATCAGGG
genomic: AATCATTGCTTGTCACTGACCCCAAATCAACCCACTCAAACTGTTTCAGGgtatgtactt ... taaatcacagGTCGTCTCCTGAATCAGGG
EST: gi|116384877|gb|EG427469.1|EG427469
EST:     AATCATTGCTTGTCACTGACCCCAAATCAACCCACTCAAACTGTTTCAGG                         GTCGTCTCCCGAATCAGGGGATTGTAATCTCGAGTCTGACCAGCCCTTTTT
genomic: AATCATTGCTTGTCACTGACCCCAAATCAACCCACTCAAACTGTTTCAGGgtatgtactt ... taaatcacagGTCGTCTCCTGAATCAGGGGATTGTAATCTCGAGTCTGACCAGCCCTTTTT
EST: gi|116385105|gb|EG427697.1|EG427697
EST:     AATCATTGCTTGTCACTGACCCCAAATCAACCCACTCAAACTGTTTCAGG                         GTCGTCTCCTGAATCAGGGGATTGTAATCTCGAGTCTGACCAGCCCTTTTT
genomic: AATCATTGCTTGTCACTGACCCCAAATCAACCCACTCAAACTGTTTCAGGgtatgtactt ... taaatcacagGTCGTCTCCTGAATCAGGGGATTGTAATCTCGAGTCTGACCAGCCCTTTTT
EST: gi|116385102|gb|EG427694.1|EG427694
EST:     AATCATTGCTTGTCACTGACCCCAAATCAACCCACTCAAACTGTTTCAGG                         GTCGTCTCCCGAATCAGGGGATTGTAATCTCGAGTCTGACCAGCCCTTTTT
genomic: AATCATTGCTTGTCACTGACCCCAAATCAACCCACTCAAACTGTTTCAGGgtatgtactt ... taaatcacagGTCGTCTCCTGAATCAGGGGATTGTAATCTCGAGTCTGACCAGCCCTTTTT
EST: gi|116385103|gb|EG427695.1|EG427695
EST:     AATCATTGCTTGTCACTGACCCCAAATCAACCCACTCAAACTGTTTCAGG                         GTCGTCTCCTGAATCAGGGGATTGTAATCTCGAGTCTGCCCACCCCTTTTT
genomic: AATCATTGCTTGTCACTGACCCCAAATCAACCCACTCAAACTGTTTCAGGgtatgtactt ... taaatcacagGTCGTCTCCTGAATCAGGGGATTGTAATCTCGAGTCTGACCAGCCCTTTTT
EST: gi|116384864|gb|EG427456.1|EG427456
EST:     AATCATTGCTTGTCACTGACCCCAAATCAACCCACTCAAACTGTTTCAGG                         GTCGTCTCCTGAATCACGGGATTGTAATCTCGAGTCTGACCAGCCCTTTTT
genomic: AATCATTGCTTGTCACTGACCCCAAATCAACCCACTCAAACTGTTTCAGGgtatgtactt ... taaatcacagGTCGTCTCCTGAATCAGGGGATTGTAATCTCGAGTCTGACCAGCCCTTTTT
EST: gi|116412350|gb|EG454942.1|EG454942
EST:     AATCATTGCCTGTCACTGACCCCAAATCAACCCACTCAAACTGTTTCAGG                         GTCGTCTCCTGAATCAGGGGGATTGTAATCTCGAGTCTGACCAGCCCTTTT
genomic: AATCATTGCTTGTCACTGACCCCAAATCAACCCACTCAAACTGTTTCAGGgtatgtactt ... taaatcacagGTCGTCTCCTGAATCAGGGG-ATTGTAATCTCGAGTCTGACCAGCCCTTTT
EST: gi|116412316|gb|EG454908.1|EG454908
EST:     AATCATTGCTTGTCACTGACCCCAAATCAACCCACTCAAACTGTTTCAGG                         GTCGTCTCCTGAATCAGGGGATTGTAATCTCGAGTCTGACCAGCCCTTTTT
genomic: AATCATTGCTTGTCACTGACCCCAAATCAACCCACTCAAACTGTTTCAGGgtatgtactt ... taaatcacagGTCGTCTCCTGAATCAGGGGATTGTAATCTCGAGTCTGACCAGCCCTTTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaaatagctattattacctcttgatgtctgatcatacgctatactaaatcacagGTCGTCTCCTGAATCAGGGGATTGTAATCTCGAGTCTGACCAGCCCTTTTTGGAATATACATCAACCGTGACTGATGTGATTCAA
                                          tactaaa  putative branch site (score: 1)
                                        tatactaaat  TA-rich tract