1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagtattttctgttctgcatttgattatagatatacattttcccctttcactcattctcattcttgatgcttcatttgtgtatcatattctagATTTCAAGATGTATTGATCCTCTCTCTAACTCGAGCCATTCTTCTCTTAACACAGACAAGATTTGAAAGCAAAGAGTGACATGACAGACAATTGACTGAT
species | Arabidopsis thaliana |
transcript | AT3G54060.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTGACCAGCCCTTTTTGGAATATACATCAACCGTGACTGATGTGATTCAA ATTTCAAGATGTATTGATCCTCTCTCTAACTCGAGCCATTCTTCTCTTAACEST: gi|116385105|gb|EG427697.1|EG427697
genomic: CTGACCAGCCCTTTTTGGAATATACATCAACCGTGACTGATGTGATTCAAgtgagtattt ... catattctagATTTCAAGATGTATTGATCCTCTCTCTAACTCGAGCCATTCTTCTCTTAAC
EST: CTGACCAGCCCTTTTTGGAATATACATCAACCGTGACTGATGTGATTCAA ATTTCAAGATGTATTGATCCTCTCTCTAACTCGAGCCATTCTTTCTCT-AAEST: gi|116385102|gb|EG427694.1|EG427694
genomic: CTGACCAGCCCTTTTTGGAATATACATCAACCGTGACTGATGTGATTCAAgtgagtattt ... catattctagATTTCAAGATGTATTGATCCTCTCTCTAACTCGAGCCATTCTT-CTCTTAA
EST: CTGACCAGCCCTTTTTGGAATATACATCAACCGTGACTGATGTGATTCAA ATTTCAAGATGTATTGATCCTCTCTCTAACTCGAGCCATTCTTEST: gi|116385103|gb|EG427695.1|EG427695
genomic: CTGACCAGCCCTTTTTGGAATATACATCAACCGTGACTGATGTGATTCAAgtgagtattt ... catattctagATTTCAAGATGTATTGATCCTCTCTCTAACTCGAGCCATTCTT
EST: CTGCCCACCCCTTTTTGGAATATACATCACCCGTGACTGATGTGATTCAA ATTTCAAGATGTATTGATCCTCTCTCTAACTCGAGCCATTCTTCTCTTAAC
genomic: CTGACCAGCCCTTTTTGGAATATACATCAACCGTGACTGATGTGATTCAAgtgagtattt ... catattctagATTTCAAGATGTATTGATCCTCTCTCTAACTCGAGCCATTCTTCTCTTAAC
tttcccctttcactcattctcattcttgatgcttcatttgtgtatcatattctagATTTCAAGATGTATTGATCCTCTCTCTAACTCGAGCCATTCTTCTCTTAACACAGACAAGATTTGAAAGCAAAGAGTGACATGACAGACAATTGACTGAT
tcttgat putative branch site (score: 4)
tatcatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtattttctgttctgcatttgattatagatatacattttcccctttcactcattctcattcttgatgcttcatttgtgtatcatattctagATTTCAAGATGTATTGATCCTCTCTCTAACTCGAGCCATTCTTCTCTTAACACAGACAAGATTTGAAAGCAAAGAGTGACATGACAGACAATTGACTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG