1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaagttctttttctttcgtaaaaaactctaatttttaactatgttaatgtttttggtggctttatggtttattggtagtttacctttgtcccttgtctcacatgtctttctccaactctgtacagAGCACCACGACCTTGGGAAGATCCGAGCACCCTTGCATCCTCTCAGAAAGAAGATGCAGATTCAGCACGCTTACCAGCAGATACATCAGGGGTCAAAACT
species | Arabidopsis thaliana |
transcript | AT3G52220.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGCTGATGCTGTGTGGGTTCACGGTCTTGGATATGCTAA AGCACCACGACCTTGGGAAGATCCGAGCACCCTTGCATCCTCTCAGAAAGAEST: gi|301503170|gb|HO208710.1|HO208710
genomic: TGCTGATGCTGTGTGGGTTCACGGTCTTGGATATGCTAAgtaagttctt ... ctctgtacagAGCACCACGACCTTGGGAAGATCCGAGCACCCTTGCATCCTCTCAGAAAGA
EST: GGTGCAGGGAATGCTGATGCTGTGTGGGTTCACGGTCTTGGATATGCTAA AGCACCACGACCTTGGGAAGATCCGAGCACCCTTGCATCCTCTCAGAAAGAEST: gi|125143016|gb|EL179930.1|EL179930
genomic: GGTGCAGGGAATGCTGATGCTGTGTGGGTTCACGGTCTTGGATATGCTAAgtaagttctt ... ctctgtacagAGCACCACGACCTTGGGAAGATCCGAGCACCCTTGCATCCTCTCAGAAAGA
EST: TTCACGGTCTTGGATATGCTAA AGCACCACGACCTTGGGAAGATCCGAGCACCCTTGCATCCTCTCEST: gi|124950204|gb|EL025685.1|EL025685
genomic: TTCACGGTCTTGGATATGCTAAgtaagttctt ... ctctgtacagAGCACCACGACCTTGGGAAGATCCGAGCACCCTTGCATCCTCTC
EST: GGTGCAGGGAATGCTGATGCTGTGTGGGTTCACGGTCTTGGATATGCTAA AGCACCACGACCTTGGGAAGATCCGAGCACCCTTGEST: gi|164157632|gb|ES164652.1|ES164652
genomic: GGTGCAGGGAATGCTGATGCTGTGTGGGTTCACGGTCTTGGATATGCTAAgtaagttctt ... ctctgtacagAGCACCACGACCTTGGGAAGATCCGAGCACCCTTG
EST: GGTGCAGGGAATGCTGATGCTGTGTGGGTTCACGGTCTTGGATATGCTAA AGCACCACGACCTTGGGAAGATCCGAGC
genomic: GGTGCAGGGAATGCTGATGCTGTGTGGGTTCACGGTCTTGGATATGCTAAgtaagttctt ... ctctgtacagAGCACCACGACCTTGGGAAGATCCGAGC
attggtagtttacctttgtcccttgtctcacatgtctttctccaactctgtacagAGCACCACGACCTTGGGAAGATCCGAGCACCCTTGCATCCTCTCAGAAAGAAGATGCAGATTCAGCACGCTTACCAGCAGATACATCAGGGGTCAAAACT
gtctcac putative branch site (score: 3)
tctttctccaactct putative PPT
tagttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttctttttctttcgtaaaaaactctaatttttaactatgttaatgtttttggtggctttatggtttattggtagtttacctttgtcccttgtctcacatgtctttctccaactctgtacagAGCACCACGACCTTGGGAAGATCCGAGCACCCTTGCATCCTCTCAGAAAGAAGATGCAGATTCAGCACGCTTACCAGCAGATACATCAGGGGTCAAAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT