1 5' 3' | 2 5' 3' | 3 5' 3' |
AATTCAGTTGGGATGAAGTCAAGGCTGATAAATATAGGGAGAACTATTTGGGTCACAGTATCAAAGCCCCTGTTGGAAGATGGCAAAAAGgtactttttcttatgtacactctcggtggttgttaatttgtaagctaactagttttcatcttgacgatataatcctcctttgtgcttcattgctctgttc...
species | Arabidopsis thaliana |
transcript | AT3G52220.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GAACTATTTGGGTCACAGTATCAAAGCCCCTGTTGGAAGATGGCAAAAAG GTAAAGATCTTCATTGGTATGCTAGATATAAAAAGCAAAAGGGTTCCGAGAEST: gi|164114491|gb|EL980727.1|EL980727
genomic: GAACTATTTGGGTCACAGTATCAAAGCCCCTGTTGGAAGATGGCAAAAAGgtactttttc ... aactgaatagGTAAAGATCTTCATTGGTATGCTAGAGATAAAAAGCAAAAGGGTTCCGAGA
EST: GAACTATTTGGGTCACAGTATCAAAGCCCCTGTTGGAAGATGACAAAAAG GTAAAGATCTTCATTGGTAEST: gi|301502507|gb|HO208047.1|HO208047
genomic: GAACTATTTGGGTCACAGTATCAAAGCCCCTGTTGGAAGATGGCAAAAAGgtactttttc ... aactgaatagGTAAAGATCTTCATTGGTA
EST: GAACTATTTGGGTCACAGTATCAAAGCCCCTGTTGGAAGATGGCAAAAAG GTAAAGATCTTCATTGGTATGCTAGAGATAAAAAGCAAAAGGGTTCCGAGA
genomic: GAACTATTTGGGTCACAGTATCAAAGCCCCTGTTGGAAGATGGCAAAAAGgtactttttc ... aactgaatagGTAAAGATCTTCATTGGTATGCTAGAGATAAAAAGCAAAAGGGTTCCGAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTCAGTTGGGATGAAGTCAAGGCTGATAAATATAGGGAGAACTATTTGGGTCACAGTATCAAAGCCCCTGTTGGAAGATGGCAAAAAGgtactttttcttatgtacactctcggtggttgttaatttgtaagctaactagttttcatcttgacgatataatcctcctttgtgcttcattgctctgttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cactctcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctccttt