1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GAGGAAGGGAGTGATGAATCTGAAAAGTCTAGATCTGAGATAAATGATGAAGATGAAGCCAGTGGGGAGgtaacaattccactaagcaatgtagagtttctctatataatgtcttttattcatgacccattttcttctgtacctggtgcttgctttctgaagatgtatgtttggcttaatatttctctgcag
species | Arabidopsis thaliana |
transcript | AT3G51880.3 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CTGAAAAGTCTAGATCTGAGATAAATGATGAAGATGAAGCCAGTGGGGAG GAAGAACTATTAGAGAAGGAAGCGGCAEST: gi|163966768|gb|ES095591.1|ES095591
genomic: CTGAAAAGTCTAGATCTGAGATAAATGATGAAGATGAAGCCAGTGGGGAGgtaacaattc ... ttctctgcagGAAGAACTATTAGAGAAGGAAGCGGCA
EST: CTGAAAAGTCTAGATCTGAGATAAATGATGAAGATGAAGCCAGTGGGGAG GAAGAACTACTAGAGAAGGAAGCGGCAGGTGA
genomic: CTGAAAAGTCTAGATCTGAGATAAATGATGAAGATGAAGCCAGTGGGGAGgtaacaattc ... ttctctgcagGAAGAACTATTAGAGAAGGAAGCGGCAGGTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGGAAGGGAGTGATGAATCTGAAAAGTCTAGATCTGAGATAAATGATGAAGATGAAGCCAGTGGGGAGgtaacaattccactaagcaatgtagagtttctctatataatgtcttttattcatgacccattttcttctgtacctggtgcttgctttctgaagatgtatgtttggcttaatatttctctgcag
- - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC