1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagtatttgtgtatgattttcactctaggagattctcacttgtattgttgaacttcatataaattcttactgttttttttgtttctttgtttcagAGAAGATTTTAGGGTCACGTTCAAGAAAGAAAATCCAAATGTGAAGGCCGTCTCTGCT
species | Arabidopsis thaliana |
transcript | AT3G51880.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CCCAAACAAACCAAAAAAGAGCTCCTAGTGCCTTCTTTGTCTTTCT AGAAGATTTTAGGGTCACGTTCAAGAAAGAAAATCCAAATGTGAAGGCCGTEST: gi|124719501|gb|EH810903.1|EH810903
genomic: CCCAAACAAACC-AAAAAGAGCTCCTAGTGCCTTCTTTGTCTTTCTgtaagtattt ... tttgtttcagAGAAGATTTTAGGGTCACGTTCAAGAAAGAAAATCCAAATGTGAAGGCCGT
EST: CCTTCTTTGTCTTTCT AGAAGATTTTAGGGTCACGTTCAAGAAAGAAAATCCAAATGTGAAGGCCGTEST: gi|164023029|gb|ES065881.1|ES065881
genomic: CCTTCTTTGTCTTTCTgtaagtattt ... tttgtttcagAGAAGATTTTAGGGTCACGTTCAAGAAAGAAAATCCAAATGTGAAGGCCGT
EST: AAAAAGAGCTCCTAGTGCCTTCTTTGTCTTTCT AGAAGATTTTAGGGTCACGTTCAAGAAAGAAAATCCAAATGTGAAGGCCGT
genomic: AAAAAGAGCTCCTAGTGCCTTCTTTGTCTTTCTgtaagtattt ... tttgtttcagAGAAGATTTTAGGGTCACGTTCAAGAAAGAAAATCCAAATGTGAAGGCCGT
tgtattgttgaacttcatataaattcttactgttttttttgtttctttgtttcagAGAAGATTTTAGGGTCACGTTCAAGAAAGAAAATCCAAATGTGAAGGCCGTCTCTGCT
ttcttac putative branch site (score: 2)
ttcttactgttttttt CT-rich tract
atataaattcttactg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtatttgtgtatgattttcactctaggagattctcacttgtattgttgaacttcatataaattcttactgttttttttgtttctttgtttcagAGAAGATTTTAGGGTCACGTTCAAGAAAGAAAATCCAAATGTGAAGGCCGTCTCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA