1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagcatttggcagattccttgatagtttacatgtacggtagtctttactaggtgaagtcctcatggtctcaccttctcttttccttgtcaagGTTGGGAAAGCTGGAGGGCAGAAATGGAAGTCAATGTCTCAAGCT
species | Arabidopsis thaliana |
transcript | AT3G51880.3 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTAGGGTCACGTTCAAGAAAGAAAATCCAAATGTGAAGGCCGTCTCTGCT GTTGGGAAAGCTGGAGGGEST: gi|124719501|gb|EH810903.1|EH810903
genomic: TTAGGGTCACGTTCAAGAAAGAAAATCCAAATGTGAAGGCCGTCTCTGCTgtaagcattt ... ccttgtcaagGTTGGGAAAGCTGGAGGG
EST: TTAGGGTCACGTTCAAGAAAGAAAATCCAAATGTGAAGGCCGTCTCTGCT GTTGGGAAAGCTGGAGGGCAGAAATGGAAGTCAATGEST: gi|124769114|gb|EH859244.1|EH859244
genomic: TTAGGGTCACGTTCAAGAAAGAAAATCCAAATGTGAAGGCCGTCTCTGCTgtaagcattt ... ccttgtcaagGTTGGGAAAGCTGGAGGGCAGAAATGGAAGTCAATG
EST: TTAGGGTCACGTTCAAGAAAGAAAATCCAAATGTGAAGGCCGTCTCTGCT GTTGGGAAAGCTGGAGGGCAGAAATGGAAGTCAAEST: gi|164023029|gb|ES065881.1|ES065881
genomic: TTAGGGTCACGTTCAAGAAAGAAAATCCAAATGTGAAGGCCGTCTCTGCTgtaagcattt ... ccttgtcaagGTTGGGAAAGCTGGAGGGCAGAAATGGAAGTCAA
EST: TTAGGGTCACGTTCAAGAAAGAAAATCCAAATGTGAAGGCCGTCTCTGCT GTTGGGAAAGCTGGAGGGCNGAAA
genomic: TTAGGGTCACGTTCAAGAAAGAAAATCCAAATGTGAAGGCCGTCTCTGCTgtaagcattt ... ccttgtcaagGTTGGGAAAGCTGGAGGGCAGAAA
gtagtctttactaggtgaagtcctcatggtctcaccttctcttttccttgtcaagGTTGGGAAAGCTGGAGGGCAGAAATGGAAGTCAATGTCTCAAGCT
gtctcac putative branch site (score: 3)
tcctcatggtctcacc CT-rich tract
tttacta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcatttggcagattccttgatagtttacatgtacggtagtctttactaggtgaagtcctcatggtctcaccttctcttttccttgtcaagGTTGGGAAAGCTGGAGGGCAGAAATGGAAGTCAATGTCTCAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT