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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCGACTCTGCTTCCGCCGCTTTTGCTCAAACCATCAGAATCACTGTTTCTCATGGCTCATCGCACCACGATCTTCATATTTCTGCTCACGCCACTTTCGgtaacaaaactctcagctccgtttctgatccatcgcctgaaaattccaaataatcgaagcctgagagaatttagcgtgattcattatgaaatttttcttgctctatttagtttttgttgaagttgtgttagtgtagttgaagattgatatgtttaagctcgaatgtgataactag

Basic information

species Arabidopsis thaliana
transcript AT3G51780.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86044251|gb|DR340006.1|DR340006
EST:     TCATGGCTCATCGCACCACGATCTTCATATTTCTGCTCACGCCACTTTCG                         GGGATGTAAAGAAAGCTCTTGTTCAGAAAACTGGATTGGAAGCTAGTGAAT
genomic: TCATGGCTCATCGCACCACGATCTTCATATTTCTGCTCACGCCACTTTCGgtaacaaaac ... tgataactagGGGATGTGAAGAAAGCTCTTGTTCAGAAAACTGGATTGGAAGCTAGTGAAT
EST: gi|86044248|gb|DR340003.1|DR340003
EST:     TCATGGCTCATCGCACCACGATCTTCATATTTCTGCTCACGCCACTTTCG                         GGGATGTAAAGAAAGCTCTTGTTCAGAAAACTGGATTGGAAGCTAGTGAAT
genomic: TCATGGCTCATCGCACCACGATCTTCATATTTCTGCTCACGCCACTTTCGgtaacaaaac ... tgataactagGGGATGTGAAGAAAGCTCTTGTTCAGAAAACTGGATTGGAAGCTAGTGAAT
EST: gi|86044250|gb|DR340005.1|DR340005
EST:     TCATGGCTCATCGCACCACGATCTTCATATTTCTGCTCACGCCACTTTCG                         GGGATGTAAAGAAAGCTCTTGTTCAGAAAACTGGATTGGAAGCTAGTGAAT
genomic: TCATGGCTCATCGCACCACGATCTTCATATTTCTGCTCACGCCACTTTCGgtaacaaaac ... tgataactagGGGATGTGAAGAAAGCTCTTGTTCAGAAAACTGGATTGGAAGCTAGTGAAT
EST: gi|86024173|gb|DR319926.1|DR319926
EST:     TCATGGCTCATCGCACCACGATCTTCATATTTCTGCTCACGCCACTTTCG                         GGGATGTGAAGAAAGCTCTTGTTCAGAAAACTGGATTGGAAGCTAGTGAAT
genomic: TCATGGCTCATCGCACCACGATCTTCATATTTCTGCTCACGCCACTTTCGgtaacaaaac ... tgataactagGGGATGTGAAGAAAGCTCTTGTTCAGAAAACTGGATTGGAAGCTAGTGAAT
EST: gi|86044249|gb|DR340004.1|DR340004
EST:     TCATGGCTCATCGCACCACGATCTTCATATTTCTGCTCACGCCACTTTCG                         GGGATGTAAAGAAAGCTCTTGTTCAGAAAACTGGATTGGAAGCTAGTGAAT
genomic: TCATGGCTCATCGCACCACGATCTTCATATTTCTGCTCACGCCACTTTCGgtaacaaaac ... tgataactagGGGATGTGAAGAAAGCTCTTGTTCAGAAAACTGGATTGGAAGCTAGTGAAT
EST: gi|86044254|gb|DR340009.1|DR340009
EST:     TCATGGCTCATCGCACCACGATCTTCATATTTCTGCTCACGCCACTTTCG                         GGGATGTAAAGAAAGCTCTTGTTCAGAAAACTGGATTGGAAGCTAGTGAAT
genomic: TCATGGCTCATCGCACCACGATCTTCATATTTCTGCTCACGCCACTTTCGgtaacaaaac ... tgataactagGGGATGTGAAGAAAGCTCTTGTTCAGAAAACTGGATTGGAAGCTAGTGAAT