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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttccaagggaatggctttttctgattggtgaatgggatcttgtataatcctaacaaatacgtttaatacctttcacacatttactctagtttcgggatggcgacagTCCATATTACAATATAGATTTGACGGGGATACGTGTTGCTGGGAAGCAGTTGTCTCTTCATTCGAGAGTCTTTGACGGGGAACATGGCGCCGTACTAGAC

Basic information

species Arabidopsis thaliana
transcript AT3G50050.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G50050.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA01G39800.1 (Glycine max), 3'ss of exon 6
gtatgtttccaagggaatggctttttctgattggtgaatgggatcttgtataatcctaacaaatacgtttaatacctttcacacatttactctagtttcgggatggcgacagTCCATATTACAATATAGATTTGACGGGGATACGTGTTGCTGGGAAGCAGTTGTCTCTTCATTCGAGAGTCTTTGACGGGGAACATGGCGCCGTACTAGAC
|| |||  |      |||  ||| ||   || | |    |   || || ||  || |||||||| | ||| ||   | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||| |||||| |||||||   ||  | |  |  | |  || ||||| ||  |||||||  | ||  | || 
gtgtgtgcc-----aaatttcttatttc-atagatatgagatgtcatgcattttcttaacaaatgcatttgattaatctcacacatttactctagtttcgggatggcgacagTCCATATTACAATATTGATTTGAAGGAGATACATGTTGCGGGGAAGCGACTGCATTTAAACCCAAAGGTTTTTGATGGAAAACATGGAACTGTCTTGGAT

upper sequence: AT3G50050.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA11G05490.1 (Glycine max), 3'ss of exon 3
gtatgtttccaagggaatggctttttctgattggtgaatgggatcttgtataatcctaacaaatacgtttaatacctttcacacatttactctagtttcgggatggcgacagTCCATATTACAATATAGATTTGACGGGGATACGTGTTGCTGGGAAGCAGTTGTCTCTTCATTCGAGAGTCTTTGACGGGGAACATGGCGCCGTACTAGAC
|| ||| ||      |||  ||| || | || | |    |   || || ||  || |||||||| | ||| ||   | |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| || ||||| |||||| |||||||   ||  | |  |  | |  || ||||| ||| |||||||  | ||  | || 
gtgtgtgtc-----aaatttcttatttt-atagatatgagatgtcatgcattttcttaacaaatgcatttgattaatctcacacatttactctagttttgggatggcgacagTCCATATTACAATATTGATTTGAAGGAGATACATGTTGCGGGGAAGCGACTGCATTTAAACCCAAAGGTTTTTGATGGGAAACATGGAACTGTCTTGGAT

upper sequence: AT3G50050.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA17G17990.1 (Glycine max), 3'ss of exon 3
gtatgtttccaagggaatggctttttctgattggtgaatgggatcttgtataatcctaacaaatacgtttaatacctttcacacatttactctagtttcgggatggcgacagTCCATATTACAATATAGATTTGACGGGGATACGTGTTGCTGGGAAGCAGTTGTCTCTTCATTCGAGAGTCTTTGACGGGGAACATGGCGCCGTACTAGAC
|| |||||| ||         ||| |||  | | |    |   |  || ||  || |||||||| | ||| ||   | |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| || |||||  |||||||||||||   || ||||  |  | |  || ||||| ||  |||||||  | ||  | || 
gtgtgtttcaaaac------ttttatcttctagatatgagatgtaatgcattttcttaacaaatgcattttattaatctcacacatttactctagtttcggggtggcgacagTCCATATTACAATATTGATTTGAAGGAGATACACGTTGCTGGGAAGCGACTGCCTCTAAACGCAAATGTTTTTGATGGAAAACATGGGACTGTCTTGGAT

upper sequence: AT3G50050.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA05G21800.1 (Glycine max), 3'ss of exon 3
gtatgtttccaagggaatggctttttctgattggtgaatgggatcttgtataatcctaacaaatacgtttaatacctttcacacatttactctagtttcgggatggcgacagTCCATATTACAATATAGATTTGACGGGGATACGTGTTGCTGGGAAGCAGTTGTCTCTTCATTCGAGAGTCTTTGACGGGGAACATGGCGCCGTACTAGAC
|| |||||| ||   | |    | ||||   |     |||  ||   | ||  || |||||||| | ||| ||   | |||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||| || ||| |  |||||||||||||   || ||||  |  | |  || ||||| ||  |||||||  | ||  | || 
gtgtgtttcaaa---attcttatcttctagatatgagatgtaat---gcattttcttaacaaatgcattttattaatctcacacatttactctagtttcggggtggcaacagTCCATATTACAATATTGATTTGAAGGAGATGCACGTTGCTGGGAAGCGACTGCCTCTAAACGCAAATGTTTTTGATGGAAAACATGGGACTGTCTTGGAT

upper sequence: AT3G50050.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv07s0129g00600.t01 (Vitis vinifera), 3'ss of exon 3
gtatgtttccaagggaatggctttttctgattggtgaatgggatcttgtataatcctaacaaatacgtttaatacctttcacacatttactctagtttcgggatggcgacagTCCATATTACAATATAGATTTGACGGGGATACGTGTTGCTGGGAAGCAGTTGTCTCTTCATTCGAGAGTCTTTGACGGGGAACATGGCGCCGTACTAGAC
    ||||     | |||   ||| |||  | | |  |    |     |     |||||   |||  ||| |||| | |  ||||||||||||||| |||||||||  ||||| ||||||||||||| ||  ||| || |||||   ||||||||||||||||| || |  |  | |  || ||||| ||  || ||||  |  | || || 
----gtttggtttgaaata-ttttatcttgtagatataaaacactacattcttccctaatgtataaatttgatacatatggcacatttactctagtctcgggatgggaacagTGCATATTACAATATTGACCTGAAGGAGATACACATTGCTGGGAAGCAGTTGCCTATAAACCCAATGGTTTTTGATGGAAAATATGGGACAATCCTGGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacaaatacgtttaatacctttcacacatttactctagtttcgggatggcgacagTCCATATTACAATATAGATTTGACGGGGATACGTGTTGCTGGGAAGCAGTTGTCTCTTCATTCGAGAGTCTTTGACGGGGAACATGGCGCCGTACTAGAC
          tttaata  TA-rich tract