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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAGATCCATATCAATCCCACATCGAAAACTCCACAAATCCGACTCAAAATCACTTCCTCACTCTCGCATGAGACTCTACGACGATCTTCTTATTAATGGgtaatctccttttccatatttcccgatctgggtcatgtaaagatgtctcttttatatactattatatcgtatttgtag

Basic information

species Arabidopsis thaliana
transcript AT3G50050.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164129416|gb|ES010409.1|ES010409
EST:     TCACTTCCTCACTCTCGCATGAGACTCTACGACGATCTTCTTATTAATGG                         GTATTACACTACGAGGCTTTGGATTGGTACACC
genomic: TCACTTCCTCACTCTCGCATGAGACTCTACGACGATCTTCTTATTAATGGgtaatctcct ... gtatttgtagGTATTACACTACGAGGCTTTGGATTGGTACACC
EST: gi|19876974|gb|AU237805.1|AU237805
EST:     TCACTTCCTCACTCTCGCATGAGACTCTACGACGATCTTCTTATTAATGG                         GTATTACACTACGAGGCTTTGGATTGGTACACCACCACAAATGTTTGCTCT
genomic: TCACTTCCTCACTCTCGCATGAGACTCTACGACGATCTTCTTATTAATGGgtaatctcct ... gtatttgtagGTATTACACTACGAGGCTTTGGATTGGTACACCACCACAAATGTTTGCTCT
EST: gi|164065323|gb|ES066335.1|ES066335
EST:     CACTTCCTCACTCTCGCATGAGACTCTACGACGATCTTCTTATTAAATGG                         GTATTACACTACGAGGCTTTGGATTGGTACACC
genomic: CACTTCCTCACTCTCGCATGAGACTCTACGACGATCTTCTTATTAA-TGGgtaatctcct ... gtatttgtagGTATTACACTACGAGGCTTTGGATTGGTACACC