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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTGGTACACCACCACAAATGTTTGCTCTTATAGTTGATTCTGGTAGTACTGTTACTTATGTTCCTTGTTCTGATTGTGAACAATGTGGCAAACACCAGgtaatgatggctctagatatccaaatcttgtgtcttgtctcgtgtaaagttgcaaattttgaaactttcttatggttattgatcag

Basic information

species Arabidopsis thaliana
transcript AT3G50050.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G50050.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA05G21800.1 (Glycine max), 5'ss of exon 2
GATTGGTACACCACCACAAATGTTTGCTCTTATAGTTGATTCTGGTAGTACTGTTACTTATGTTCCTTGTTCTGATTGTGAACAATGTGGCAAACACCAGgtaatgatg--gctctagatatccaaatcttgtgtcttgtct-cgtg-taaagttgcaaattttgaaactttcttatggttattgatcag-----------
||| ||||| || || || ||||||||||| || |||||| | || || |||||||| |||||||| || ||   ||| |||||||||||||  |||||||||||||||  ||  |   | |     | || | | |||  |  ||  ||| ||| |  |||| ||   | | | || |   || |  |            
GATCGGTACTCCTCCGCAGATGTTTGCTCTCATTGTTGATACGGGGAGCACTGTTACGTATGTTCCGTGCTCCACTTGCGAACAATGTGGCAGGCACCAGgtaatgatgctgcattctgtttttttttttttttttttgcttatgtaataatgtttcgtatttggatgatgtgtgattgcc-ttaactatgttaatttgga

upper sequence: AT3G50050.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA01G39800.1 (Glycine max), 5'ss of exon 5
GATTGGTACACCACCACAAATGTTTGCTCTTATAGTTGATTCTGGTAGTACTGTTACTTATGTTCCTTGTTCTGATTGTGAACAATGTGGCAAACACCAGgtaatgatggctctagatatccaaatcttgtgtcttgtctcgtgtaaagttgcaaattttgaaactttcttatggttat-tgatcag----------------
||| || || || || || | |||||||||||| |||||| | || ||||||||||| |||||||| || |||  ||||  ||| ||||| |  |||||||| ||| |   || || ||            || | |     |  |    ||   |||||||    || |||   || | | |  |                 
GATCGGCACTCCTCCGCAGAGGTTTGCTCTTATTGTTGATACGGGGAGTACTGTTACCTATGTTCCGTGCTCTACTTGTAGACACTGTGGTAGCCACCAGgtgatgct---tccagctactacccctacacgtttggatcaataaattaatgtttattttgattgattattaattttgtgtaaagaagctgctatttgattgt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19876974|gb|AU237805.1|AU237805
EST:     CTGTTACTTATGTTCCTTGTTCTGATTGTGAACAATGTGGCAAACACCAG                         GACCCAAAATTTCAGCCAGAAATGTCTAGCACTTATCAACCTGTTAAGTGT
genomic: CTGTTACTTATGTTCCTTGTTCTGATTGTGAACAATGTGGCAAACACCAGgtaatgatgg ... tattgatcagGACCCAAAATTTCAGCCAGAAATGTCTAGCACTTATCAACCTGTTAAGTGT