1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaaggatcttcgactcgagtttctcttcactctgtatctcccacaattttggtctcatgttgattccatttccagGTATGTAGTTGATGCTGCAGATCCTGACAACCTAAGTGTGTCGAAAAGTGAACTCCATGATTTGTTGAGCAAGACTTCGCTTAATGGTATCCCTCTTCTC
species | Arabidopsis thaliana |
transcript | AT3G49870.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTTTCTGCCATTGT GTATGTAGTTGATGCTGCAGATCCTGACAACCTAAGTGTGTCGAAAAGTGAEST: gi|125105832|gb|EL159480.1|EL159480
genomic: GTTTCTGCCATTGTgtaaggatct ... ccatttccagGTATGTAGTTGATGCTGCAGATCCTGACAACCTAAGTGTGTCGAAAAGTGA
EST: AGATTCCGCAGCATGTGGGAACGTTACTGTCGCGCTGTTTCTGCCATTGT GTATGTAGTTGATGCTGCAGATCCTGACAACCTAAGTEST: gi|124767423|gb|EH857553.1|EH857553
genomic: AGATTCCGCAGCATGTGGGAACGTTACTGTCGCGCTGTTTCTGCCATTGTgtaaggatct ... ccatttccagGTATGTAGTTGATGCTGCAGATCCTGACAACCTAAGT
EST: AGATTCCGCAGCATGTGGGAACGTTACTGTCGCGCTGTTTCTGCCATTGT GTATGTAGTTGATGEST: gi|124773901|gb|EH864030.1|EH864030
genomic: AGATTCCGCAGCATGTGGGAACGTTACTGTCGCGCTGTTTCTGCCATTGTgtaaggatct ... ccatttccagGTATGTAGTTGATG
EST: CGCGCTGTTTCTGCCATTGT GTATGTAGTTGATGCTGCAGATCCTGACAACCTAAGTGTGTCGAAAAGTGAEST: gi|86072842|gb|DR368599.1|DR368599
genomic: CGCGCTGTTTCTGCCATTGTgtaaggatct ... ccatttccagGTATGTAGTTGATGCTGCAGATCCTGACAACCTAAGTGTGTCGAAAAGTGA
EST: AGATTCCGCAGCATGTGGGAACGTTACTGTCGCGCTGTTTCTGCCATTGT GTATGTAGTTGATGCTGCAGATCCTGACAACCTAAGTGTGTCGAAAAGTGAEST: gi|125108644|gb|EL161469.1|EL161469
genomic: AGATTCCGCAGCATGTGGGAACGTTACTGTCGCGCTGTTTCTGCCATTGTgtaaggatct ... ccatttccagGTATGTAGTTGATGCTGCAGATCCTGACAACCTAAGTGTGTCGAAAAGTGA
EST: AGATTCCGCAGCATGTGGGAACGTTACTGTCGCGCTGTTTCTGCCATTGT GTATGTAGTTG
genomic: AGATTCCGCAGCATGTGGGAACGTTACTGTCGCGCTGTTTCTGCCATTGTgtaaggatct ... ccatttccagGTATGTAGTTG
ttctcttcactctgtatctcccacaattttggtctcatgttgattccatttccagGTATGTAGTTGATGCTGCAGATCCTGACAACCTAAGTGTGTCGAAAAGTGAACTCCATGATTTGTTGAGCAAGACTTCGCTTAATGGTATCCCTCTTCTC
tgttgat putative branch site (score: 4)
ttccatttcc CT-rich tract
acaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggatcttcgactcgagtttctcttcactctgtatctcccacaattttggtctcatgttgattccatttccagGTATGTAGTTGATGCTGCAGATCCTGACAACCTAAGTGTGTCGAAAAGTGAACTCCATGATTTGTTGAGCAAGACTTCGCTTAATGGTATCCCTCTTCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA