1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CGTGGAGGAGAATTCTCTCAGGCGGATCTGTTTGTCGGAGCTTTTGTGAATCATCATCATCAATGGGTTTGTTGGAAGCTTTTCTCAATTGGCTTCGTAGgtaaagagccttccttaagatttcttcttcttcttcaattgaaatcgtgttgcaaccaaattacatcaccgttatcagctcaatagtatttgaatcgtgg...
species | Arabidopsis thaliana |
transcript | AT3G49870.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CATCATCATCAATGGGTTTGTTGGAAGCTTTTCTCTAATTGGCTTCGTAG CCTCTTCTTCAAGCAAGAAATGGAGCTEST: gi|86072842|gb|DR368599.1|DR368599
genomic: CATCATCATCAATGGGTTTGTTGGAAGCTTTTCTC-AATTGGCTTCGTAGgtaaagagcc ... gattttgcagCCTCTTCTTCAAGCAAGAAATGGAGCT
EST: TCATCATCATCAATGGGTTTGTTGGAAGCTTTTCTCAATTGGCTTCGTAG CCTCTTCTTCAAGCAAGAAATGGAGCTTTCTTTGATAGGACTTCAAAATGCEST: gi|125097821|gb|EL154160.1|EL154160
genomic: TCATCATCATCAATGGGTTTGTTGGAAGCTTTTCTCAATTGGCTTCGTAGgtaaagagcc ... gattttgcagCCTCTTCTTCAAGCAAGAAATGGAGCTTTCTTTGATAGGACTTCAAAATGC
EST: TCATCATCATCAATGGGTTTGTTGGAAGCTTTTCTCAATTGGCTTCGTAG AEST: gi|125097821|gb|EL154160.1|EL154160
genomic: TCATCATCATCAATGGGTTTGTTGGAAGCTTTTCTCAATTGGCTTCGTAGgtaaagagcc ... gattttgcag-
EST: TCATCATCATCAATGGGTTTGTTGGAAGCTTTTCTCAATTGGCTTCGTAG A
genomic: TCATCATCATCAATGGGTTTGTTGGAAGCTTTTCTCAATTGGCTTCGTAGgtaaagagcc ... gattttgcag-
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGTGGAGGAGAATTCTCTCAGGCGGATCTGTTTGTCGGAGCTTTTGTGAATCATCATCATCAATGGGTTTGTTGGAAGCTTTTCTCAATTGGCTTCGTAGgtaaagagccttccttaagatttcttcttcttcttcaattgaaatcgtgttgcaaccaaattacatcaccgttatcagctcaatagtatttgaatcgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttcctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttcttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaccaaa