1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ACTGGTGGATACAGTGAAGACATGATTCCTACGgtaagcgttacactacatgtcttataaagttcatctttcacctaacttgtggaataacatgaagagatatctcctttgtgtttttgatcag
species | Arabidopsis thaliana |
transcript | AT3G49870.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ACTGGTGGATACAGTGAAGACATGATTCCTACG GTCGGGTTTAACATGAGGAAAGTAACAAAAGGAAAEST: gi|86072842|gb|DR368599.1|DR368599
genomic: ACTGGTGGATACAGTGAAGACATGATTCCTACGgtaagcgtta ... ttttgatcagGTCGGGTTTAACATGAGGAAAGTAACAAAAGGAAA
EST: ACTGGTGGATACAGTGAAGACATGATTCCTACG GTCGGGTTTAACATGAGGAAAGTAACAAAAGGAAATGTTACAATCAAACTAEST: gi|125233523|gb|EL247608.1|EL247608
genomic: ACTGGTGGATACAGTGAAGACATGATTCCTACGgtaagcgtta ... ttttgatcagGTCGGGTTTAACATGAGGAAAGTAACAAAAGGAAATGTTACAATCAAACTA
EST: TGAAGACATGATTCCTACG GTCGGGTTTAACATGAGGAAAGTAACAAAAGGAAATGTTACAATCAAACTA
genomic: TGAAGACATGATTCCTACGgtaagcgtta ... ttttgatcagGTCGGGTTTAACATGAGGAAAGTAACAAAAGGAAATGTTACAATCAAACTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTGGTGGATACAGTGAAGACATGATTCCTACGgtaagcgttacactacatgtcttataaagttcatctttcacctaacttgtggaataacatgaagagatatctcctttgtgtttttgatcag
- TGGTGG
- GGTGGA
- - - - - - - TGAAGA