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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGGGTTGATAATAAGTGATTCTTTGAACCATACTTCAATTATCAATGGTGCTCGAGGTTCAGGAGCCACTATCCGCGTTTTCCAACACAACAgtaagcatttctatgcttcactctccatattttcatgacatacatatatatttatgccctcttgttgatggcttctcaacacctgctcatttggaaaag

Basic information

species Arabidopsis thaliana
transcript AT3G48790.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G48790.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv14s0068g01300.t01 (Vitis vinifera), 5'ss of exon 6
GGAGGGTTGATAATAAGTGATTCTTTGAACCATACTTCAATTATCAATGGTGCTCGAGGTTCAGGAGCCACTATCCGCGTTTTCCAACACAACAgtaagcatttctatgcttcactc--tccatattttcatgacatacatatatatttatgccctctt-gttgatggcttctcaacacctgctcatttggaaaag
||||| || || || |||||||| ||||| ||||  || ||| | |||||||||||||| || ||||| ||||| || ||||||||||| || ||||||  ||  | ||    |     |   || |||    | |||   ||   | || |   |||| | |   ||    | ||  |  |||    |  ||   
GGAGGCTTAATTATTAGTGATTCCTTGAATCATAGCTCCATTGTGAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAACATAATAgtaagtcttgatgtggcatatatggtttttactttttaaaaatatg-atgcctataaggtgtcttagctagagggcagttaaatctggcttgagttaaagc-

upper sequence: AT3G48790.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv17s0000g00500.t01 (Vitis vinifera), 5'ss of exon 6
GGAGGGTTGATAATAAGTGATTCTTTGAACCATACTTCAATTATCAATGGTGCTCGAGGTTCAGGAGCCACTATCCGCGTTTTCCAACACAACAgtaagc----atttctatgcttcactctccatattttcatgacat-acatatatatttatgccctcttgttgatggcttctcaacacctgctcatttggaaaag
|| ||||||||||| ||||||||||||||||| |  || ||| |||||||||||||||| |||||||| ||  | || |||||||||||||| |||| |     ||| |  |  ||   |     ||  || |    || | | ||| ||||  |   |||| | |||    | || |   |  ||   ||  |    
GGGGGGTTGATAATTAGTGATTCTTTGAACCACAACTCCATTGTCAATGGTGCTCGAGGATCAGGAGCTACCGTTCGAGTTTTCCAACACAATAgtatgttgatattgcatttgtttttttggagtaaatttaccctatgaaacatacatttgagtgttcttatggatatggt-tctatgtcatctttcttatag---