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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgcatacaccttgtgatatgaacgcttatgttactaccaaaacatatgtttttagtagcttaattacacagccatgtatacagGGAGGGTTGATAATAAGTGATTCTTTGAACCATACTTCAATTATCAATGGTGCTCGAGGTTCAGGAGCCACTATCCGCGTTTTCCAACACAACA

Basic information

species Arabidopsis thaliana
transcript AT3G48790.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G48790.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv14s0068g01300.t01 (Vitis vinifera), 3'ss of exon 5
--------------gtaatgcatacaccttgtgatatgaacgcttatg----------ttactacca--aaacatatgtttttagtagcttaattacacagccatgtatacagGGAGGGTTGATAATAAGTGATTCTTTGAACCATACTTCAATTATCAATGGTGCTCGAGGTTCAGGAGCCACTATCCGCGTTTTCCAACACAACA
               ||||     ||| |  | | | |    |   ||          ||  |  ||  || | |    | | | |   ||   |    |    ||| |||||||||| || || || |||||||| ||||| ||||  || ||| | |||||||||||||| || ||||| ||||| || ||||||||||| || |
gtttgtacagttaactaataagagcacttcataacaagggttcacgtggcttagaagctttgtgtcactaatccttgaatgtgaatgttttggcttgttatttctgtttacagGGAGGCTTAATTATTAGTGATTCCTTGAATCATAGCTCCATTGTGAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAACATAATA

upper sequence: AT3G48790.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv17s0000g00500.t01 (Vitis vinifera), 3'ss of exon 5
--------------------gtaatgcatacaccttgtgatatgaacgct-tatgttactaccaaaacatatgtt---tttagtagcttaattacacagccatg-tatacagGGAGGGTTGATAATAAGTGATTCTTTGAACCATACTTCAATTATCAATGGTGCTCGAGGTTCAGGAGCCACTATCCGCGTTTTCCAACACAACA
                     || ||  || |   |   |     | |   |   |    |   ||   | | ||   | |   |   |  || ||  |  ||| |  |||||| ||||||||||| ||||||||||||||||| |  || ||| |||||||||||||||| |||||||| ||  | || |||||||||||||| |
gtattcagttatttaaattgatattgtctatattgtacaaggcttatgtaatgcatgggcattgaattctttattcaatgtgaaattcttctttcattgtgatgattcacagGGGGGGTTGATAATTAGTGATTCTTTGAACCACAACTCCATTGTCAATGGTGCTCGAGGATCAGGAGCTACCGTTCGAGTTTTCCAACACAATA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttactaccaaaacatatgtttttagtagcttaattacacagccatgtatacagGGAGGGTTGATAATAAGTGATTCTTTGAACCATACTTCAATTATCAATGGTGCTCGAGGTTCAGGAGCCACTATCCGCGTTTTCCAACACAACA
                             gcttaat  putative branch site (score: 4)
          aaaacatatgttttta  TA-rich tract