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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGGAATGTGTTGCTAAATTTGTGGGAAAACCTGCTGCTGTTGTTTTTGGCATGGGCTACTTAACAAACTCGGCTATCATTTCTGTCTTGATTGGCAAGgtaatgcatacaccttgtgatatgaacgcttatgttactaccaaaacatatgtttttagtagcttaattacacagccatgtatacag

Basic information

species Arabidopsis thaliana
transcript AT3G48790.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G48790.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GRMZM2G010202_T02 (Zea mays), 5'ss of exon 5
TGAGGAATGTGTTGCTAAATTTGTGGGAAAACCTGCTGCTGTTGTTTTTGGCATGGGCTACTTAACAAACTCGGCTATCATTTCTGTCTTGATTGGCAAGgtaatgcatacaccttgtgatatgaacgcttatg-ttactaccaaaacat----atgtttttagtagcttaattacacagccatgtatacag
 || ||   |||||| | |||||| || || ||||| ||| || ||||||||||||||||  | |||||||| ||||||||| | |   || |||| ||||||     ||     ||  | ||  | ||| |   || ||         |    |||   |  | |||| |     || |  ||   | |||
CGAAGAGCTTGTTGCAAGATTTGTTGGTAAGCCTGCAGCTATTCTTTTTGGCATGGGCTATGTGACAAACTCTGCTATCATTCCAGCGCTGGTTGGGAAGgtatgttctatgttgtg-aagatatatgctcaaactttctgttttgttcttttcatgagctctgcagctgaggc-tactgtaataattgcag

upper sequence: AT3G48790.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv17s0000g00500.t01 (Vitis vinifera), 5'ss of exon 5
TGAGGAATGTGTTGCTAAATTTGTGGGAAAACCTGCTGCTGTTGTTTTTGGCATGGGCTACTTAACAAACTCGGCTATCATTTCTGTCTTGATTGGCAAGgta-------------atgcatacaccttgtgatatg-aacgcttatgttac-------taccaaaacatatgtt---tttagtagcttaattacacagccatg-tatacag
 |||||||||||||| || ||||| ||||| ||||||||  | || ||||||||||||||  | |||||||| |||||| || | ||| ||||||| ||||||             ||  |||     | |  | |  || |||||||| |         |   ||   | | ||   | |   |   |  || ||  |  ||| |  ||||
GGAGGAATGTGTTGCAAACTTTGTTGGAAAGCCTGCTGCAATAGTCTTTGGCATGGGCTATGTGACAAACTCTGCTATCCTTCCGGTCCTGATTGGGAAGgtattcagttatttaaattgatattgtctatattgtacaaggcttatgtaatgcatgggcattgaattctttattcaatgtgaaattcttctttcattgtgatgattcacag