1 5' 3' | 2 5' 3' | 3 5' 3' |
AGTGATCGATAGAATGAAAGCAGCAGTAGAGACAGCATGTCCAAGGACTGTTTCATGCGCAGATATACTTACCATCGCAGCTCAACAAGCTGTAAATTTGgtatgcaccattaatttatctctcttttttcatttattataaacattgtctcaaattattctgtttagtcgtcacggataacatattaaaacatgacaac...
species | Arabidopsis thaliana |
transcript | AT3G32980.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTTCATGCGCAGATATACTTACCATCGCAGCTCAACAAGCTGTAAATTTG GCAGGAGGTCCTTCTTGGAGGGTTCCTTTGGGGAGAAGAGATAGCTTACAAEST: gi|116439430|gb|EG482022.1|EG482022
genomic: TTTCATGCGCAGATATACTTACCATCGCAGCTCAACAAGCTGTAAATTTGgtatgcacca ... aatgttttagGCAGGAGGTCCTTCTTGGAGGGTTCCTTTGGGGAGAAGAGATAGCTTACAA
EST: TTTCATGCGCAGATATACTTACCATCGCAGCTCAACAAGCTGTAAATTTG GCAGGAGGTCCTTCTTGGAGGGTTCCTTTGGGGAGAAGAGATAGCTTACAAEST: gi|116420754|gb|EG463346.1|EG463346
genomic: TTTCATGCGCAGATATACTTACCATCGCAGCTCAACAAGCTGTAAATTTGgtatgcacca ... aatgttttagGCAGGAGGTCCTTCTTGGAGGGTTCCTTTGGGGAGAAGAGATAGCTTACAA
EST: TTTCATGCGCAGATATACTTACCATCGCAGCTCAACAAGCTGTAAATTTG GCAGGAGGTCCTTCTTGGAGGGTTCCTTTGGGGAGAAGAGATAGCTTACAAEST: gi|116458144|gb|EG500736.1|EG500736
genomic: TTTCATGCGCAGATATACTTACCATCGCAGCTCAACAAGCTGTAAATTTGgtatgcacca ... aatgttttagGCAGGAGGTCCTTCTTGGAGGGTTCCTTTGGGGAGAAGAGATAGCTTACAA
EST: TTTCATGCGCAGATATACTTACCATCGCAGCTCAACAAGCTGTAAATTTG GCAGGAGGTCCTTCTTGGAGGGTTCCTTTGGGGAGAAGAGATAGCTTACAAEST: gi|116439429|gb|EG482021.1|EG482021
genomic: TTTCATGCGCAGATATACTTACCATCGCAGCTCAACAAGCTGTAAATTTGgtatgcacca ... aatgttttagGCAGGAGGTCCTTCTTGGAGGGTTCCTTTGGGGAGAAGAGATAGCTTACAA
EST: TTTCATGCGCAGATATACTTACCATCGCAGCTCAACAAGCTGTAAATTTG GCAGGAGGTCCTTCTTGGAGGGTTCCTTTGGGGAGAAGAGATAGCTTACAAEST: gi|116458138|gb|EG500730.1|EG500730
genomic: TTTCATGCGCAGATATACTTACCATCGCAGCTCAACAAGCTGTAAATTTGgtatgcacca ... aatgttttagGCAGGAGGTCCTTCTTGGAGGGTTCCTTTGGGGAGAAGAGATAGCTTACAA
EST: TTTCATGCGCAGATATACTTACCATCGCAGCTCAACAAGCTGTAAATTTG GCAGGAGGTCCTTCTTGGAGGGTTCCTTTGGGGAGAAGAGATAGCTTACAAEST: gi|116422995|gb|EG465587.1|EG465587
genomic: TTTCATGCGCAGATATACTTACCATCGCAGCTCAACAAGCTGTAAATTTGgtatgcacca ... aatgttttagGCAGGAGGTCCTTCTTGGAGGGTTCCTTTGGGGAGAAGAGATAGCTTACAA
EST: TTTCATGCGCAGATATACTTACCATCGCAGCTCAACAAGCTGTAAATTTG GCAGGAGGTCCTTCTTGGAGGGTTCCTTTGGGGAGAAGAGATAGCTTACAA
genomic: TTTCATGCGCAGATATACTTACCATCGCAGCTCAACAAGCTGTAAATTTGgtatgcacca ... aatgttttagGCAGGAGGTCCTTCTTGGAGGGTTCCTTTGGGGAGAAGAGATAGCTTACAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTGATCGATAGAATGAAAGCAGCAGTAGAGACAGCATGTCCAAGGACTGTTTCATGCGCAGATATACTTACCATCGCAGCTCAACAAGCTGTAAATTTGgtatgcaccattaatttatctctcttttttcatttattataaacattgtctcaaattattctgtttagtcgtcacggataacatattaaaacatgacaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacatga