1 5' 3' | 2 5' 3' | 3 5' 3' |
...tactaaatatgtcatcatgaaaagaaaaaactatatatcattatgatttcaatatatgttgactaattaattagtgaacacataatttttgtttgtatagGGCTGTGATGCATCGATCCTGTTAGACAACACAACATCCTTTCGAACAGAGAAAGATGCGGCTCCAAACGCAAACTCGGCTCGAGGATTTCCAGTGATCG
species | Arabidopsis thaliana |
transcript | AT3G32980.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CACTTCCACGACTGTTTCGTCAAT GGCTGTGATGCATCGATCCTGTTAGACAACACAACATCCTTTCGAACAGGGEST: gi|116439430|gb|EG482022.1|EG482022
genomic: CACTTCCACGACTGTTTCGTCAATgtaagatatt ... gtttgtatagGGCTGTGATGCATCGATCCTGTTAGACAACACAACATCCTTTCGAACAGAG
EST: GTATCGCTGCAAGCATCCTTCGTCTTCACTTCCACGACTGTTTCGTCAAT GGCTGTGATGCATCGATCCTGTTAGACAACACAACATCCTTTCGAACAGAGEST: gi|116420754|gb|EG463346.1|EG463346
genomic: GTATCGCTGCAAGCATCCTTCGTCTTCACTTCCACGACTGTTTCGTCAATgtaagatatt ... gtttgtatagGGCTGTGATGCATCGATCCTGTTAGACAACACAACATCCTTTCGAACAGAG
EST: GTATCGCTGCAAGCATCCTTCGTCTTCACTTCCACGACTGTTTCGTCAAT GGCTGTGATGCATCGATCCTGTTAGACAACACAACATCCTTTCGAACAGAGEST: gi|116439429|gb|EG482021.1|EG482021
genomic: GTATCGCTGCAAGCATCCTTCGTCTTCACTTCCACGACTGTTTCGTCAATgtaagatatt ... gtttgtatagGGCTGTGATGCATCGATCCTGTTAGACAACACAACATCCTTTCGAACAGAG
EST: GTATCGCTGCAAGCATCCTTCGTCTTCACTTCCACGACTGTTTCGTCAAT GGCTGTGATGCATCGATCCTGTTAGACAACACAACATCCTTTCGAACAGAGEST: gi|116422995|gb|EG465587.1|EG465587
genomic: GTATCGCTGCAAGCATCCTTCGTCTTCACTTCCACGACTGTTTCGTCAATgtaagatatt ... gtttgtatagGGCTGTGATGCATCGATCCTGTTAGACAACACAACATCCTTTCGAACAGAG
EST: GTATCGCTGCAAGCATCCTTCGTCTTCACTTCCACGACTGTTTCGTCAAT GGCTGTGATGCATCGATCCTGTTAGACAACACAACATCCTTTCGAACAGAG
genomic: GTATCGCTGCAAGCATCCTTCGTCTTCACTTCCACGACTGTTTCGTCAATgtaagatatt ... gtttgtatagGGCTGTGATGCATCGATCCTGTTAGACAACACAACATCCTTTCGAACAGAG
atttcaatatatgttgactaattaattagtgaacacataatttttgtttgtatagGGCTGTGATGCATCGATCCTGTTAGACAACACAACATCCTTTCGAACAGAGAAAGATGCGGCTCCAAACGCAAACTCGGCTCGAGGATTTCCAGTGATCG
tttttgttt CT-rich tract
taattaattagtgaac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tactaaatatgtcatcatgaaaagaaaaaactatatatcattatgatttcaatatatgttgactaattaattagtgaacacataatttttgtttgtatagGGCTGTGATGCATCGATCCTGTTAGACAACACAACATCCTTTCGAACAGAGAAAGATGCGGCTCCAAACGCAAACTCGGCTCGAGGATTTCCAGTGATCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
tactaaa
- - - - - - - -catgaaa
- - - - - - - - - - - - aaaaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaacaca